Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00658 ATGGAGGCGTTTCCAAGAGACCAACGAGGTTCGCTCGAAGTGTTCAACCCTTCTTCTTCTTACTCCACCGAGAAGTCGGTGAACTCGCCTGTGCGTGTTCAATCCACGTGGAAGACGTGGATTGACGAGTTACCGGAACAACAACAACAACAACAATGTGGTGGTACTAACGAGGTGACCGCCACGTCATGGATGGCGCTTAAGGACTCCGCTCCTCCACCGCCGACGCTCGCCGCAGTGCTGGGCGAGTCTCTGTCAGCGGCGGTGGGGGAGGTTGGCAACGCCGCGAAGCGCGCGGCGGAGTGGGGCCTGGTGCTGAAGACGGACACGGAGACCGGGAAGCCGCAGGGAGTGAAGGTTCGGACCTCCGGCGGGGAGGAGCCGAGCGCGAAGGTGACCGGCGGGTCGAGGAGGGACTCGAGCAACTCGGTTCGGAGCTCCGGCGAGTCTTCCGACGACGGGAGGGAGTACCGGGGAGGAATACCGAGGGTTTCGGAGGACCTGAGGGACGCTTTGTCGGCGTTTCAACAGACGTTCGTGGTTTCGGACGCTACCAAACCCGATTACCCGATCATGTATGCCAGTGCCGGGTTTTTCAAGATGACGGGCTATACATCAAAGGAGGTCATAGGGAGAAACTGTCGGTTTATGCAGGGGGCAGACACGGATCCGGATGATGTGGCAAAGATAAGGGAAGCTTTACAAAGTGGGTCTACTTACTGTGGAAGGTTACTCAATTACAAGAAGGATGGCACCCCCTTTTGGAACCTTCTCACTATTGCCCCTATCAAGGACGACGATGGAAGAGTCCTCAAATTCATCGGAATGCAAGTGGAGGTTAGCAAGCATACAGAGGGGGCTAAGGAGAAGATGCTACGTCCCAATGGATTGCCCGAATCCTTGATTCGATACGATGCTCGTCAGAAAGAGAAGGCAAATAGTACAGTATCTGAGTTGTTGCTGGCTGTGAGGAGGCCTCGTGCACTGAGTGAATCAGCAGGGCGTCCCATGATCAAAAAGTCAGCATCCGGTGATGATGCACAAGACAAACCGCCAGAAAAGTCATCTAGGAGAAAATCTGAGAGTGTCGCTTCTTTTAGACGAAAATCACATGCTGGAGACAGAAGTTCAATGGAGAGAATCACTGAGCTACCTGAAAAGAAACACAAGAGCTCTCGTCGCCGTTCTTTCATGGGGTTCATCAGGAAAAGCCAGTCTAACTTTGGAAGCTTCAATGATGAAGCAGTTGTAGAGAACAGCTCTGAGAGTAGTGATGAGGATGATGAGAGGCCTGAAAGTTTTGATGGCAAAGTACAGAAGAAGGAAAAGAGAAAGGGTCTTGATCTTGCTACCACACTTGAACGTATTGAGAAGAACTTTGTCATCACTGATCCAAGGCTGCCGGACAACCCCATTATTTTTGCATCTGATAGCTTCCTGGAGCTTACAGAGTATAGTCGTGAAGAAATCTTGGGAAGAAATTGCAGGTTTTTGCAAGGCCCTGAAACTGATCCAGCAACAGTGAGAAAAATTAGAGAGGCTATTGACAATCAAACTGACGTTACCGTGCAGCTTATTAATTATACGAAGAGTGGTAAAAAGTTCTGGAACTTGTTTCATTTGCAGCCTATGCGTGATCAGAAGGGAGAGGTACAATATTTTATTGGAGTTCAACTTGATGGTAGTCAACATGTGGAGCCACTTCACAACCGCATTGCTGACGATACTGCAAAAGAGGGAGAACAATTGGTAAAAGATACTGCGGAAAATGTTGATGATGCACTGAGAGAACTTCCAGATGCTAATATGAAACCAGAAGATTTATGGATGAATCATTCAAAAGTGGTTCACCCCAAGCCTCATAGGAGGGATGAAGCTGCTTGGAAAGCCATTCAGCAGatcctaaatagtggagagcagataggcctgaatcattttaggccagttaaacccttgggatcaggagatactggcagTGTCTATCTGGTGGAGCTAGGCGAAACTGGTCATTATTTTGCCATGAAGGCAATGGAGAAGGGTGTTATGCTCAATCGTAACAAGGTGCATAGAGCTTGCACAGAGAGAGAGATACTCGACATGTTGGACCACCCTTTTCTTCCTGCATTATATGCTTCCTTTCAGACGAAGACACATGTTTGCTTGATAACTGATTATTGTTCTGGTGGAGAACTATTCCTTCTTCTTGACCGACAGCCAGCTAAGGTTCTCAGGGAAGATGCAGTGAGATTTTATGCCGCTGAAGTAGTTGTTGCGTTGGAGTATCTTCATTGTCAAGGGATAATATATCGGGATTTGAAGCCAGAAAATGTGTTACTACAAAGCAGTGGACATGTGTCTCTAACAGATTTTGATTTGTCATGTTTAACATCTTGCAAACCACAGCTTCTAGTTCCAGTTATAAATGAAAAGAAGAAAGCTCAGAAAGGCCCACACGCTCCAATATTTATGGCTGAACCTATGAGAGCATCAAATTCTTTTGTGGGGACTGAAGAGTACATAGCTCCGGAAATTATAACGGGTTCAGGCCATACAAGTGCTGTGGATTGGTGGGCTCTTGGAATTCTTTTATATGAAATGTTTTATGGGTATACACCATTCAGGGGAAAGACTAGGCAAAGAACATTTACAAATATTCTCCACAAGGACCTTAAATTTCCCAAAAGTAAACAGGTAAGTTTCAGTGCAAAGCAGTTAATGTACCGGTTGTTGAACAGAGATCCCAAAAGCAGATTGGGTTCAAGAGAAGGAGCAAATGAAATTAAGAACCATCCGTTCTTTCGGGGTGTCAATTGGGCCCTAGTTCGTTGCACGAAACCTCCTGAGCTTGATGCTCCTCTCCTCGAGACAACTGAAGGAGGAGAAAAGGAAGCCAAATTTGAAAATCAAGTGCAAGAGGACATGAACGTCTTCTAA 2934 0.4591 MEAFPRDQRGSLEVFNPSSSYSTEKSVNSPVRVQSTWKTWIDELPEQQQQQQCGGTNEVTATSWMALKDSAPPPPTLAAVLGESLSAAVGEVGNAAKRAAEWGLVLKTDTETGKPQGVKVRTSGGEEPSAKVTGGSRRDSSNSVRSSGESSDDGREYRGGIPRVSEDLRDALSAFQQTFVVSDATKPDYPIMYASAGFFKMTGYTSKEVIGRNCRFMQGADTDPDDVAKIREALQSGSTYCGRLLNYKKDGTPFWNLLTIAPIKDDDGRVLKFIGMQVEVSKHTEGAKEKMLRPNGLPESLIRYDARQKEKANSTVSELLLAVRRPRALSESAGRPMIKKSASGDDAQDKPPEKSSRRKSESVASFRRKSHAGDRSSMERITELPEKKHKSSRRRSFMGFIRKSQSNFGSFNDEAVVENSSESSDEDDERPESFDGKVQKKEKRKGLDLATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDPATVRKIREAIDNQTDVTVQLINYTKSGKKFWNLFHLQPMRDQKGEVQYFIGVQLDGSQHVEPLHNRIADDTAKEGEQLVKDTAENVDDALRELPDANMKPEDLWMNHSKVVHPKPHRRDEAAWKAIQQILNSGEQIGLNHFRPVKPLGSGDTGSVYLVELGETGHYFAMKAMEKGVMLNRNKVHRACTEREILDMLDHPFLPALYASFQTKTHVCLITDYCSGGELFLLLDRQPAKVLREDAVRFYAAEVVVALEYLHCQGIIYRDLKPENVLLQSSGHVSLTDFDLSCLTSCKPQLLVPVINEKKKAQKGPHAPIFMAEPMRASNSFVGTEEYIAPEIITGSGHTSAVDWWALGILLYEMFYGYTPFRGKTRQRTFTNILHKDLKFPKSKQVSFSAKQLMYRLLNRDPKSRLGSREGANEIKNHPFFRGVNWALVRCTKPPELDAPLLETTEGGEKEAKFENQVQEDMNVF 977
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00658 977 PANTHER PHOTOTROPIN-1 112 974 - -
Gma12g00658 977 TIGRFAM sensory_box: PAS domain S-box protein 191 285 IPR000014 -
Gma12g00658 977 TIGRFAM sensory_box: PAS domain S-box protein 470 560 IPR000014 -
Gma12g00658 977 SMART serkin_6 646 933 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma12g00658 977 Gene3D PAS domain 434 598 - -
Gma12g00658 977 CDD STKc_phototropin_like 645 952 - -
Gma12g00658 977 ProSiteProfiles PAC domain profile. 238 292 IPR000700 -
Gma12g00658 977 SUPERFAMILY Protein kinase-like (PK-like) 629 952 IPR011009 -
Gma12g00658 977 SUPERFAMILY PYP-like sensor domain (PAS domain) 185 277 IPR035965 -
Gma12g00658 977 Pfam Protein kinase domain 649 933 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma12g00658 977 MobiDBLite consensus disorder prediction 330 395 - -
Gma12g00658 977 MobiDBLite consensus disorder prediction 342 390 - -
Gma12g00658 977 Gene3D PAS domain 178 335 - -
Gma12g00658 977 ProSitePatterns Serine/Threonine protein kinases active-site signature. 767 779 IPR008271 GO:0004672|GO:0006468
Gma12g00658 977 MobiDBLite consensus disorder prediction 107 161 - -
Gma12g00658 977 MobiDBLite consensus disorder prediction 12 28 - -
Gma12g00658 977 ProSiteProfiles Protein kinase domain profile. 646 933 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma12g00658 977 SUPERFAMILY PYP-like sensor domain (PAS domain) 461 560 IPR035965 -
Gma12g00658 977 SMART pas_2 447 516 IPR000014 -
Gma12g00658 977 SMART pas_2 166 236 IPR000014 -
Gma12g00658 977 MobiDBLite consensus disorder prediction 1 28 - -
Gma12g00658 977 CDD PAS 460 560 IPR000014 -
Gma12g00658 977 CDD PAS 191 280 IPR000014 -
Gma12g00658 977 Gene3D Phosphorylase Kinase; domain 1 645 729 - -
Gma12g00658 977 ProSiteProfiles PAS repeat profile. 445 518 IPR000014 -
Gma12g00658 977 Pfam PAS domain 468 560 IPR000014 -
Gma12g00658 977 Pfam PAS domain 185 281 IPR000014 -
Gma12g00658 977 ProSiteProfiles PAC domain profile. 519 573 IPR000700 -
Gma12g00658 977 SMART pac_2 522 564 IPR001610 -
Gma12g00658 977 SMART pac_2 241 283 IPR001610 -
Gma12g00658 977 PANTHER FLIPPASE KINASE 1-RELATED 112 974 - -
Gma12g00658 977 MobiDBLite consensus disorder prediction 412 441 - -
Gma12g00658 977 MobiDBLite consensus disorder prediction 134 148 - -
Gma12g00658 977 ProSiteProfiles PAS repeat profile. 164 235 IPR000014 -
Gma12g00658 977 Gene3D Transferase(Phosphotransferase) domain 1 730 945 - -
Gma12g00658 977 ProSitePatterns Protein kinases ATP-binding region signature. 652 675 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00658 Gma-Chr12 5627030 5646178 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00658 3 962 AGC Kinase Gene Family AT3G45780 70.163 0.0 1328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Gma12g00658 Pkinase 6.7e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00658 K20715 - gmx:100804524 1920.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00658 12 5627030 5646178 Gma12g00658 12 5627030 5646178 ECH
Gma13g02947 13 44029196 44044099 Gma12g00658 12 5627030 5646178 PCT
Gma15g00416 15 3497368 3510918 Gma12g00658 12 5627030 5646178 PCT
Gma12g00658 12 5627030 5646178 Gma13g02947 13 44029196 44044099 PCT
Gma12g00658 12 5627030 5646178 Gma15g00416 15 3497368 3510918 PCT