Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00656 ATGAACAATAATGTTGGGAAAGGGAAAAAAGGTTTGGCAGAACAAAATCATATGTTTTTTGACAAAAAGAGTCTCGAAAATGGAGTAGTTAATGGAGGGGTAGCCTCTGGATCATCAACTGAAGATGACACAAGATTTAATAAGGTGGTTGAAGATGGAAACAATGGATTGAGGGGTCTGATTCAAATCCATGGGAGCTTGCAGATTTCACAACAACCACCTCAAGAGCCAGCCGTATGCTGGGAGAGATTTCTCCCATTAAGATCGATAAAAGTTTTGCTGGTGGAAGATGATGATTCGACACGCCATGTTGTGCGTGCTCTGTTACAGAATTGTAGTTACAAAGTCACTGCCGTTTCCAATGGCCTTCAAGCGTGGAAAGTCCTGGAAGATCCAGAAAATGGCATTGATCTTGTCCTAACAGAGGTAGCTATGCCTATTTTGTCTGGAATAGGTCTTTTGTGCAAGATCATGAGCCACAAAACTCTGAAGAATATTCCTGTGATTATGATGTCATCTCATGATTCTATGGGTATAGTCTTTAAGTGTTTGTCAAAAGGTGCAGTTGATTTTTTAGTGAAACCTATTCGGAGGAATGAACTTAAAAACCTCTGGCAGCACGTTTGGAGAAGATGCCACAGTTCTAGTGGTAGTGGGAGTGAAAGTGCGACCCTCACCAGAAAATTTGCAAAGTCAAGAAGTAATGATGCATATGAAAACAATAGTGACAGCAGTGATGAGAATGACTATGGAAGCAGAGGCTTGAGCATTCGTGATGGAAGTGACAATGGAAGTGGCACTCAGAGTTCATGGACTAAATGTCTAGCTCAAGTTGGCAGTCCTCATCCAGTTTCACCTCATAAACAGTTGGTTGATGCCCCTGATAGCACATGTGCCCAAGTGATGCAAACAAAGACTGAAAAAGTTAGTAGTAGATGGGTGCATGCGACGGAAAAAGAGTGCCATGAACTTATTGATCTTGATGATGTTGCAAGGGTTAAGGACTTGGCTATGGGAATATCTTTGAATATGCAACTAGAGCATCCACTCGAGGAACTGTCTAGCAATCCAATTGTGGGTAAAGGGGCAAATAAGATGTCTGATGTAGATGATATGCAGATCATTAAGAGAAAGAGCAATGTCTGTGAAAAAGGACAATTGGAATACAATGGTGATAAAACCGGGACACAGGAAAATCAGGCTATGAATGTTATTGATGTTACTGATAGCAACAGTCCACAGGCTGAAAGCAGAGACTTGAACACTCCAAATGGGTTTTCTGGTTTTTCACAATCAAAAGCAAACTGTTGCCCCAAAGAGCATCCATCCCTTGAACTAACTCTGAAAAGGCTGGGAGAAGTAGGAGATGCTAAAAATGTCACTGGTGAAGAATGCAATGTCTTGAGACATTCAGATCAGTCAGCATTCTCAAAATATAATACTGTTTCTGCTAACCAGGCTCAAACTGGAAATGTAGGAAGCTGTTCCCCACTAGACAATAGCTCAGCTGCACCAAATACAGAGACAATGCACAACTTTCCATCTCATTCAAATGGCACTCCTTCAAATCAAAAATCTAATGGGAGCAACAACATCAATGACAGGGCCTCCACTAATACATATCTTGGCACCAAACCTGATACTTTTGACAAGAAGCCGGAGTCTGGAAGAGGGATTGGCTCGTATAATTCTTGTGAACTCCTAACTGTGCAGAACAATAGCATTTCTTCATCTCAGAAGAAAACTTCTGCCTGGGAAGAATATACAGAAATCATTAAAGAATCAGTAGGAGGCTCTGAACAAGGATTCCAAGTCGAGCACACTTACTATCAGCTTCACCATTATAATCACATTGCCCATAAAGCTGCAGTAGATCCCTAA 1881 0.4131 MNNNVGKGKKGLAEQNHMFFDKKSLENGVVNGGVASGSSTEDDTRFNKVVEDGNNGLRGLIQIHGSLQISQQPPQEPAVCWERFLPLRSIKVLLVEDDDSTRHVVRALLQNCSYKVTAVSNGLQAWKVLEDPENGIDLVLTEVAMPILSGIGLLCKIMSHKTLKNIPVIMMSSHDSMGIVFKCLSKGAVDFLVKPIRRNELKNLWQHVWRRCHSSSGSGSESATLTRKFAKSRSNDAYENNSDSSDENDYGSRGLSIRDGSDNGSGTQSSWTKCLAQVGSPHPVSPHKQLVDAPDSTCAQVMQTKTEKVSSRWVHATEKECHELIDLDDVARVKDLAMGISLNMQLEHPLEELSSNPIVGKGANKMSDVDDMQIIKRKSNVCEKGQLEYNGDKTGTQENQAMNVIDVTDSNSPQAESRDLNTPNGFSGFSQSKANCCPKEHPSLELTLKRLGEVGDAKNVTGEECNVLRHSDQSAFSKYNTVSANQAQTGNVGSCSPLDNSSAAPNTETMHNFPSHSNGTPSNQKSNGSNNINDRASTNTYLGTKPDTFDKKPESGRGIGSYNSCELLTVQNNSISSSQKKTSAWEEYTEIIKESVGGSEQGFQVEHTYYQLHHYNHIAHKAAVDP 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00656 626 CDD psREC_PRR 92 195 - -
Gma12g00656 626 SMART REC_2 90 205 IPR001789 GO:0000160
Gma12g00656 626 MobiDBLite consensus disorder prediction 410 434 - -
Gma12g00656 626 ProSiteProfiles Response regulatory domain profile. 91 209 IPR001789 GO:0000160
Gma12g00656 626 MobiDBLite consensus disorder prediction 231 270 - -
Gma12g00656 626 SUPERFAMILY CheY-like 89 216 IPR011006 -
Gma12g00656 626 Gene3D - 89 250 - -
Gma12g00656 626 PANTHER TWO-COMPONENT RESPONSE REGULATOR-LIKE APRR3 31 621 - -
Gma12g00656 626 MobiDBLite consensus disorder prediction 489 557 - -
Gma12g00656 626 Pfam Response regulator receiver domain 92 203 IPR001789 GO:0000160
Gma12g00656 626 MobiDBLite consensus disorder prediction 489 545 - -
Gma12g00656 626 PANTHER TWO-COMPONENT RESPONSE REGULATOR 31 621 IPR045279 GO:0009736
Gma12g00656 626 MobiDBLite consensus disorder prediction 231 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00656 Gma-Chr12 5589242 5603635 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00656 37 305 Response Regulator Gene Family AT5G60100 60.573 2.41e-90 284
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Gma12g00656 Response_reg 4.8e-22 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00656 K12129 - gmx:100803462 1254.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00656 12 5589242 5603635 Gma12g00656 12 5589242 5603635 ECH
Gma11g01324 11 11412784 11433467 Gma12g00656 12 5589242 5603635 ECH
Gma03g00743 03 26170422 26174354 Gma12g00656 12 5589242 5603635 ECH