Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00653 ATGTTAGATCTTAATCTCAATGCGGAATGGACCGATTCGTTTAGTAACGGTGACTCGCCGTTACCGTCACAGAAGTTTCCAGAGGGTTCGAGGAACCAAATGGCGGAGTCAGGGACTTCGAATTCCTCCGTGGTGAATGCGGACGGGTCCAGTAACGGCGGCGGCGACGAGGACTCGTGCTCCACGCGCGCTGACGATGTGTACACCACCTTCAATTTCGATATCCTTAAAGTGGAAGGCGCGAACGACGTCGTAACGAAGGAGCTCTTCCCGGTGATGAGTGAAGGAGCTAAAGGACACGCTACGTCGTCATTTTCAGCGAGGAATGGTTTTGTGGATCTCTCGTTCGATCGCGAAGGAGGGGACAGTGAGATGAAGATGCTtcagcctcagaatcagcctcagactcagactcagactcagcAACCAGCGAAGAAGAGTAGGAGAGGACCGAGGTCTCGAAGCTCGCAATACAGAGGGGTTACTTTTTACAGAAGGACGGGAAGATGGGAATCGCATATCTGGGATTGCGGGAAGCAAGTCTATTTGGGTGGATTTGACACGGCTCATGCTGCTGCCAGAGCCTATGATCGAGCTGCTATTAAGTTCAGGGGAGTTGATGCTGATATCAATTTCAATCTGAGTGATTATGAGGATGATCTTAAACAGATGAAGAATTTGTCCAAGGAGGAATTCGTACATATACTGCGTCGCCAAAGTACTGGTTTCTCAAGAGGAAGTTCTAAATACCGAGGAGTAACACTCCACAAGTGTGGCCGGTGGGAAGCTCGAATGGGACAATTCCTTGGCAAAAAGGCTTATGACAAGGCAGCTATCAAATGCAACGGAAGGGAAGCAGTGACCAACTTTGAGCCAAGTACTTATGAAGGAGAAATGAAATCTGCAGCCATTAATGAAGGTGGCGGTCAGAATCTTGATCTCAATTTGGGCATAGCAACCCCAGGACCTGGTCCCAAGGAAAATTGGGGGCAACTTCACTTCCCCTCCATCCCTTACAACACACATGGTGGAAGAAGTTCAAAGATGGAAACCAATGTTAATTCTGGAATTGGTAATCCATCTTTGAAAAGGATGGTTGTAACTGAAGATCGTCCTTCATTATGGAATGGCATGTCTCCTAATTTCTTTCCCAATGGGGAAAGAGCAGAGAGAATCGGCATTGATCCTTCAAAAGGACTCCCCAATTGGGCGTGGCAAACACATGGCCAGGTCAATGCTACCCCAGTACCATCGTTCTCTGCTGCAGCATCATCAGGATTCTCAATTTCAGCTACCTTTCCATCGACTGCCATCTTTCCAACAAGTTCTATGAACTCAATTCCCCAGAGTCTCTGTTTTACTTCATCCAGCTCGCCTACCCGCAATGTATCTGAATATTATTACCAGGTTAAGCCCCCGCAGGCACCACCATAG 1434 0.4658 MLDLNLNAEWTDSFSNGDSPLPSQKFPEGSRNQMAESGTSNSSVVNADGSSNGGGDEDSCSTRADDVYTTFNFDILKVEGANDVVTKELFPVMSEGAKGHATSSFSARNGFVDLSFDREGGDSEMKMLQPQNQPQTQTQTQQPAKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNLSDYEDDLKQMKNLSKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKAYDKAAIKCNGREAVTNFEPSTYEGEMKSAAINEGGGQNLDLNLGIATPGPGPKENWGQLHFPSIPYNTHGGRSSKMETNVNSGIGNPSLKRMVVTEDRPSLWNGMSPNFFPNGERAERIGIDPSKGLPNWAWQTHGQVNATPVPSFSAAASSGFSISATFPSTAIFPTSSMNSIPQSLCFTSSSSPTRNVSEYYYQVKPPQAPP 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00653 477 MobiDBLite consensus disorder prediction 8 61 - -
Gma12g00653 477 Gene3D AP2/ERF domain 156 214 IPR036955 GO:0003700|GO:0006355
Gma12g00653 477 Gene3D AP2/ERF domain 248 292 IPR036955 GO:0003700|GO:0006355
Gma12g00653 477 SUPERFAMILY DNA-binding domain 248 292 IPR016177 GO:0003677
Gma12g00653 477 ProSiteProfiles AP2/ERF domain profile. 157 213 IPR001471 GO:0003700|GO:0006355
Gma12g00653 477 MobiDBLite consensus disorder prediction 126 146 - -
Gma12g00653 477 CDD AP2 157 215 IPR001471 GO:0003700|GO:0006355
Gma12g00653 477 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-7 1 445 - -
Gma12g00653 477 SUPERFAMILY DNA-binding domain 156 214 IPR016177 GO:0003677
Gma12g00653 477 SMART rav1_2 249 297 IPR001471 GO:0003700|GO:0006355
Gma12g00653 477 SMART rav1_2 157 219 IPR001471 GO:0003700|GO:0006355
Gma12g00653 477 MobiDBLite consensus disorder prediction 119 158 - -
Gma12g00653 477 Pfam AP2 domain 157 205 IPR001471 GO:0003700|GO:0006355
Gma12g00653 477 CDD AP2 248 293 IPR001471 GO:0003700|GO:0006355
Gma12g00653 477 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 445 - -
Gma12g00653 477 MobiDBLite consensus disorder prediction 1 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00653 Gma-Chr12 5505492 5509894 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00653 1 477 AP2-EREBP Transcription Factor Family AT5G60120 45.020 4.95e-102 311
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gma12g00653 AP2 6.8e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00653 K09284 - gmx:100788303 904.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00653 12 5505492 5509894 Gma12g00653 12 5505492 5509894 ECH
Gma11g01330 11 11508232 11512862 Gma12g00653 12 5505492 5509894 ECH
Gma12g00653 12 5505492 5509894 Gma11g01330 11 11508232 11512862 GST
Gma13g02939 13 43957771 43962210 Gma12g00653 12 5505492 5509894 PCT
Gma15g00423 15 3589693 3594385 Gma12g00653 12 5505492 5509894 PCT
Gma12g00653 12 5505492 5509894 Gma13g02939 13 43957771 43962210 PCT
Gma12g00653 12 5505492 5509894 Gma15g00423 15 3589693 3594385 PCT