Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00648 ATGGATCGGTTCTTTGGAAACTTGCCGCCAATGGATCTGATGCGCTCCGAGACGATGACCTTCGTCCAGCTCATCATCCCCGCCGAGTCCGCGCACCGCGCCATCAACTATTTAGGCGAACTCGGCCTCCTTCAATTCCGCGACTTAAATGCTGAAAAAAGCCCCTTCCAGAGAATATTTGTTAACCAGGTAAAGCGATGTGCAGAAATGTCAAGAAAGCTACGATTCTTCGAGGATCAAATCAATAAAGCTGGTCTAATGTCTTCTCCTTCAGTCTTGCAAACAGATATTTATCTGGAGGATTTAGAGATACAACTTGCTGAGCATGAACATGAGCTAATTGAAATGAACTCTAACAGTGAGAAACTTCGGCAATCATATAATGAACTCCTGGAGTTCAAGATTGTATTACAAAAGGCATGTCGTTTTCTTGTTTCAAGTCATGGCAATGCTTTTTCAGAAGAGAGAGAACTGGAGGAGAATGTTTTCTCAAATGGAGACTATATTGAGACACCATTTTTGTTTGAGCAGGAAATGAGGCATGCACCATCAGATCAATCTGGTTTAAGATTTATCAGTGGGATAATTTGTAAATCCAAAGTTCTTAGGTTTGAAAGGATGTTGTTTCGTGCCACAAGAGGCAATATGCTTTTCAATCATGCACTAGCCGATGAACAAATCATGGATCCTATTTCAACTGAGATGGTTGAGAAAATTGTGTTTGTTGTGTTTTTCTCTGGGGAGCAAGCAAGAACCAAGATTCTGAAAATTTGTGATGCATTTGGTGCAAATTGTTACCCTGTTCCTGAAGATATAAGTAAACAGAGGCAAATAACTTCGGAGGTTTCATCCCGTCTTGCTGACTTAGAGGCAACTCTGGATGCTGGGATTAGGCATCGGAATAAGGCTCTAGCTTCTGTAGGAGGCCATTTAACAAAATGGATGGACATGGTAAGAAGAGAGAAGGCTGTGTATGATACACTGAACATGCTAAATTTTGATGTCACCAAAAAATGTCTTGTTGGAGAGGGCTGGTGCCCTATATTTGCAAAAACACAGATTCAGGAGGCACTGCAGCGTGCAACTTTTGACAGTAGTTCTCAAGTTGGCATAATCTTTCATTCAATGGATGCACTGGAATCACCACCTACATATTTTAGGACCAATAGTTTCACAAGTCCATATCAGGAAATTGTTGATGCATATGGTGTTGCAAGATATCAAGAAGCAAATCCTGCAGTTTATACCACTATTATATTCCCATTTCTTTTCGCGGTTATGTTTGGTGACTGGGGTCATGGAATTTGCCTGTTGCTGGGAGCGTTGGTTCTTATAGCACGTCAAAGCAAGCTCAGCACTCAGCGACTTGGAAGCTTTATGGAGATGCTATTTGGTGGGCGTTATGTGCTACTTTTGATGTCACTATTTTCAATCTATTGTGGGTTAATCTACAATGAATTCTTCTCAGTTCCTTATCACATATTTGGTCCATCTGCTTATAAATGCCGAGATAACTCATGCAGGGATGCACATACTATTGGCTTAGTAAAATACCGAGAACCATATCCATTTGGTGTGGATCCCAGTTGGCGGGGAAGTCGTTCAGAGTTGCCTTTTCTAAACTCTCTCAAGATGAAGATGTCCATTCTGCTGGGTGTGGTGCACATGAACTTGGGAATTCTTTTAAGTTATTTCAATGCTCGTTTCTTTGGCAATTCGCTGGATATAAGGTACCAGTTTGTGCCCCAGATGATTTTCCTTAACTGTCTATTTGGGTATCTTTCCCTTCTCATCGTTGTCAAGTGGTGTACTGGCTCTCAGGCAGACCTTTATCATGTAATGATTTACATGTTTTTAAGCCCTTTTGACAATCTTGGTGAGAATCAATTATTCTGGGGCCAAAGACCACTTCAAGTTGTGTTATTGCTTTTGGCTGTAATTGCAGTTCCATGGATGCTCTTTCCAAAACCTTTTATACTAAAGAAGCTTCATAATGAGAGATTTCAAGGACGCACTTATGGTGTGCTTAATAACTCTGAGGTTGATCTTGAGTTGGAACCAGATTCTGCCAGGCAACATCATGAGGAATTCAATTTCAGTGAGGTTTTTGTTCACCAAATGATTCACTCCATTGAGTTTGTTCTAGGTTCAGTTTCAAATACAGCCTCATATCTACGACTTTGGGCATTAAGCTTGGCTCACTCAGAACTTTCCACCGTTTTTTATGAGAAAGTCCTGTTACTTGCTTGGGGGTATGACAATCTTGTCATTCGGTTAGTGGGGCTAGCTGTTTTTGCCTTTGCAACTGCCTTTATACTACTAATGATGGAGACTCTCAGCGCTTTTCTTCACGCCTTGCGTCTTCACTGGGTAGAATTTCAGAATAAATTCTACAGCGGTGATGGCTACAAGTTCAAACCTTTTTCCTTTGCCTCCTTAACAGAGGATGAAAATTGA 2457 0.4111 MDRFFGNLPPMDLMRSETMTFVQLIIPAESAHRAINYLGELGLLQFRDLNAEKSPFQRIFVNQVKRCAEMSRKLRFFEDQINKAGLMSSPSVLQTDIYLEDLEIQLAEHEHELIEMNSNSEKLRQSYNELLEFKIVLQKACRFLVSSHGNAFSEERELEENVFSNGDYIETPFLFEQEMRHAPSDQSGLRFISGIICKSKVLRFERMLFRATRGNMLFNHALADEQIMDPISTEMVEKIVFVVFFSGEQARTKILKICDAFGANCYPVPEDISKQRQITSEVSSRLADLEATLDAGIRHRNKALASVGGHLTKWMDMVRREKAVYDTLNMLNFDVTKKCLVGEGWCPIFAKTQIQEALQRATFDSSSQVGIIFHSMDALESPPTYFRTNSFTSPYQEIVDAYGVARYQEANPAVYTTIIFPFLFAVMFGDWGHGICLLLGALVLIARQSKLSTQRLGSFMEMLFGGRYVLLLMSLFSIYCGLIYNEFFSVPYHIFGPSAYKCRDNSCRDAHTIGLVKYREPYPFGVDPSWRGSRSELPFLNSLKMKMSILLGVVHMNLGILLSYFNARFFGNSLDIRYQFVPQMIFLNCLFGYLSLLIVVKWCTGSQADLYHVMIYMFLSPFDNLGENQLFWGQRPLQVVLLLLAVIAVPWMLFPKPFILKKLHNERFQGRTYGVLNNSEVDLELEPDSARQHHEEFNFSEVFVHQMIHSIEFVLGSVSNTASYLRLWALSLAHSELSTVFYEKVLLLAWGYDNLVIRLVGLAVFAFATAFILLMMETLSAFLHALRLHWVEFQNKFYSGDGYKFKPFSFASLTEDEN 818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00648 818 Pfam V-type ATPase 116kDa subunit family 37 810 IPR002490 GO:0033179|GO:0046961|GO:1902600
Gma12g00648 818 PANTHER VACUOLAR PROTON ATPASES 5 817 IPR002490 GO:0033179|GO:0046961|GO:1902600
Gma12g00648 818 Coils Coil 99 126 - -
Gma12g00648 818 PIRSF ATP6V0A1 9 818 IPR026028 GO:0000220|GO:0046961
Gma12g00648 818 PANTHER VACUOLAR PROTON ATPASE A1 5 817 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00648 Gma-Chr12 5442909 5455228 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00648 1 811 Primary Pumps ATPases(2) AT2G28520 80.000 0.0 1337
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00648 K02154 - gmx:100800799 1638.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00648 12 5442909 5455228 Gma12g00648 12 5442909 5455228 ECH
Gma12g00648 12 5442909 5455228 Gma11g01336 11 11579777 11590550 GST
Gma13g02934 13 43902103 43917255 Gma12g00648 12 5442909 5455228 PCT
Gma15g00426 15 3625419 3636122 Gma12g00648 12 5442909 5455228 PCT
Gma12g00648 12 5442909 5455228 Gma13g02934 13 43902103 43917255 PCT
Gma12g00648 12 5442909 5455228 Gma15g00426 15 3625419 3636122 PCT