Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00645 ATGGATCCTTCCAGTGGACAACACCAGCAAATGTCTAGCCAGTCATTGGAGAACATGTTGGCATGTTCAAAAGCACAGCAAGAGAGGAAGCCAAGGCCTCAGCCAGAACAGGCTCTGAAGTGTCCCAGATGTGACTCCACCAACACCAAATTCTGCTACTACAATAATTACAGCCTCTCCCAACCAAGGTATTTCTGCAAGTCCTGCAGGAGATATTGGACCAAAGGAGGTACACTTAGGAATGTCCCTGTGGGAGGAGGGTGCAGGAAGAACAAAAGGTCATCATCATCATCATCTTCAACATCAAAGAGAGTTCAAGACCAAGCATTCACACCAAATCCTAACTCTCTCATTGGCCTTCCTTCATTGTCCTATGACTCAAGTGACCTCACTCTTGCATTGGCAAGGCTTCAAAAGCAGTCATGTGGGCAATTGGGGTATGATGAGCATGATCTTTCAATGTTGGGGAACCACCACCCAAGCACCCCATGTGATAATATCCTTGGCATGCATCATCACTCATCATCATCCACAAACCCAGGGTTCTTGGATGCCCTCAGAAGTGGGTTCCTTGGAACACAAAGTAGTAATATGCAGCAGAATCTGTACTATGGATATGGGAATGGAGACATGGGGGAGGTGGACAATGGAAATGCTTCTTGTGGTGGAGAGATGATGATGATGCCTTATAATGATCAAGAAATGAGTGTTGCATCCACACAGGCAGTGACAGTCACCACCATGAAGCAAGAAATTTGCAATGGAAGGGAACCAAGTAGTGAGAGTAGGGTGTTGTGGGGTTTTCCATGGCAATTCAATAATGCTGACACAAACATGGGTGAACTTGACTCAGGAAGAGCTAGTTGGAATGGCATCAATTCATCATGGCATGGACTTCTCAACAGTCCCCTAATGTAG 918 0.4597 MDPSSGQHQQMSSQSLENMLACSKAQQERKPRPQPEQALKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRSSSSSSSTSKRVQDQAFTPNPNSLIGLPSLSYDSSDLTLALARLQKQSCGQLGYDEHDLSMLGNHHPSTPCDNILGMHHHSSSSTNPGFLDALRSGFLGTQSSNMQQNLYYGYGNGDMGEVDNGNASCGGEMMMMPYNDQEMSVASTQAVTVTTMKQEICNGREPSSESRVLWGFPWQFNNADTNMGELDSGRASWNGINSSWHGLLNSPLM 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00645 305 MobiDBLite consensus disorder prediction 1 40 - -
Gma12g00645 305 Pfam Dof domain, zinc finger 37 93 IPR003851 GO:0003677|GO:0006355
Gma12g00645 305 ProSiteProfiles Zinc finger Dof-type profile. 39 93 IPR003851 GO:0003677|GO:0006355
Gma12g00645 305 ProSitePatterns Zinc finger Dof-type signature. 41 77 IPR003851 GO:0003677|GO:0006355
Gma12g00645 305 MobiDBLite consensus disorder prediction 90 116 - -
Gma12g00645 305 MobiDBLite consensus disorder prediction 1 22 - -
Gma12g00645 305 PANTHER DOF ZINC FINGER PROTEIN DOF3.2-LIKE 7 304 - -
Gma12g00645 305 MobiDBLite consensus disorder prediction 83 116 - -
Gma12g00645 305 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 7 304 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00645 Gma-Chr12 5407489 5409564 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00645 1 305 C2C2-Dof Transcription Factor Family AT2G28510 40.909 2.65e-55 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Gma12g00645 zf-Dof 6.3e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00645 - - gmx:100799737 623.624
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00645 12 5407489 5409564 Gma12g00645 12 5407489 5409564 ECH
Gma12g00645 12 5407489 5409564 Gma11g01339 11 11616899 11619746 GST
Gma13g02933 13 43887757 43889350 Gma12g00645 12 5407489 5409564 PCT
Gma15g00427 15 3650204 3652254 Gma12g00645 12 5407489 5409564 PCT
Gma12g00645 12 5407489 5409564 Gma13g02933 13 43887757 43889350 PCT
Gma12g00645 12 5407489 5409564 Gma15g00427 15 3650204 3652254 PCT