Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00644 ATGGGAGCTGCTCGCAAGTTGAATTCCCACCGAAGAAGGCAGAGGAAGGCTGACAAATCATACAAGAAATCACATCTTGGAAATGAATGGAAAAAGCCATTTGCTGGATCGTCTCATGCAAAAGGCATTCAACCAAACTCTGCCATTAGAAAATGTGCTCGAGTACAATTAATAAAAAATGGAAAGAAGATTGCAGCTTTTGTGCCAAATGATGGTTGCTTGAACTATATTGAAGAAAATGATGAAATGCTTATTGCTGGTTTTGGGCGAAAAGGGCATGCAGTTGGAGATATTCCTGGAGTCCGATTTAAGGTTGTGAAGGTATCTGGGGTGTCTCTTCTCGCCCTCTTCAAAGAGAAGAAGGAGAAGCCTAGGTCTTGA 381 0.4199 MGAARKLNSHRRRQRKADKSYKKSHLGNEWKKPFAGSSHAKGIQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEMLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00644 126 Gene3D - 19 126 IPR012340 -
Gma12g00644 126 MobiDBLite consensus disorder prediction 1 20 - -
Gma12g00644 126 CDD Ribosomal_S23 20 123 IPR005680 GO:0003735|GO:0006412|GO:0015935
Gma12g00644 126 PANTHER 40S RIBOSOMAL PROTEIN S23 1 126 - -
Gma12g00644 126 Pfam Ribosomal protein S12/S23 41 125 IPR006032 GO:0003735|GO:0005840|GO:0006412
Gma12g00644 126 PIRSF RPS12p_RPS12a_RPS23e_RPS12o 2 126 IPR006032 GO:0003735|GO:0005840|GO:0006412
Gma12g00644 126 SUPERFAMILY Nucleic acid-binding proteins 15 124 IPR012340 -
Gma12g00644 126 MobiDBLite consensus disorder prediction 1 45 - -
Gma12g00644 126 PANTHER 30S RIBOSOMAL PROTEIN S12 FAMILY MEMBER 1 126 IPR006032 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00644 Gma-Chr12 5404338 5404942 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00644 1 126 Cytoplasmic Ribosomal Protein Gene Family AT5G02960 86.029 9.00e-79 227
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00644 K02973 - gmx:100787234 246.899
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00644 12 5404338 5404942 Gma12g00644 12 5404338 5404942 ECH
Gma11g01340 11 11621632 11622186 Gma12g00644 12 5404338 5404942 ECH
Gma03g01641 03 42540599 42542397 Gma12g00644 12 5404338 5404942 ECH
Gma19g01689 19 46198888 46202587 Gma12g00644 12 5404338 5404942 ECH
Gma10g00463 10 4490111 4491618 Gma12g00644 12 5404338 5404942 ECH