Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00641 ATGGAAAACAGTGACATTTCCTCTGCCCCACTTTCTCACTCCCCCACTAATTCCTCTTCTTCCTCACCAACACCACCTTCACCTCCTACTGTTGTGATGAGTCCTTGTGCTGCATGCAAGATTTTGAGGAGAAGATGTGCTGAGAAATGTGTCTTGGCACCTTATTTTCCTCCAACTGAACCTGCCAAGTTTACCATTGCACACCGGGTATTTGGTGCCAGCAACATCATCAAGTTCCTTCAGGAGCTTCCAGAGTCTCAGAGAGCTGATGCAGTGACCAGCATGGTGTATGAGGCTAGTGCAAGAATAAGAGACCCTGTTTATGGTTGTGCAGGGGCAATTTGCCAGCTCCAAAAGCAGATCAATGAACTTCAAGCACAATTGGCCAAGGCACAAGCTGAGCTTGTGAACATGCAGATTCAGCAAGCCAATCTTGTGGCTCTAATTTGCATGAAAATGGCACAGAGTCCACAGGAATCACCACAACAATTAGTGGATGATTTCATTTCAACTCCTCCCCACAGTGGTGGTGCCTATCAAAGTGGCATGAACTTCTTTGAGGACAACACTAGCCTAAACTCACTATGGGAACAGCCCCTTTGGACATGA 609 0.468 MENSDISSAPLSHSPTNSSSSSPTPPSPPTVVMSPCAACKILRRRCAEKCVLAPYFPPTEPAKFTIAHRVFGASNIIKFLQELPESQRADAVTSMVYEASARIRDPVYGCAGAICQLQKQINELQAQLAKAQAELVNMQIQQANLVALICMKMAQSPQESPQQLVDDFISTPPHSGGAYQSGMNFFEDNTSLNSLWEQPLWT 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00641 202 PANTHER LOB DOMAIN-CONTAINING PROTEIN 1 17 198 - -
Gma12g00641 202 MobiDBLite consensus disorder prediction 1 20 - -
Gma12g00641 202 ProSiteProfiles LOB domain profile. 34 135 IPR004883 -
Gma12g00641 202 MobiDBLite consensus disorder prediction 1 31 - -
Gma12g00641 202 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 17 198 - -
Gma12g00641 202 Pfam Lateral organ boundaries (LOB) domain 35 132 IPR004883 -
Gma12g00641 202 Coils Coil 114 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00641 Gma-Chr12 5368511 5370501 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00641 31 202 AS2 family AT1G07900 67.816 1.16e-78 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Gma12g00641 LOB 1.7e-41 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00641 12 5368511 5370501 Gma12g00641 12 5368511 5370501 ECH
Gma12g00641 12 5368511 5370501 Gma11g01343 11 11660483 11662956 GST
Gma13g02928 13 43838719 43840847 Gma12g00641 12 5368511 5370501 PCT
Gma15g00431 15 3686146 3687823 Gma12g00641 12 5368511 5370501 PCT
Gma12g00641 12 5368511 5370501 Gma13g02928 13 43838719 43840847 PCT
Gma12g00641 12 5368511 5370501 Gma15g00431 15 3686146 3687823 PCT