Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00639 ATGAAGGACCGGGAACACAGCGAGGCGGAGACGCAAAAAATGAGGGAGGAACTCTGCCGTCGGATCCACGACGAGAAGGTGGCGAGGGAGATTTCCACGATTCCCGAGAAGGACTGGGAGCAGTGGGGCGACAACTTCGAGAAACCGTTCAGAGAGGGCTCGTCCTCTTCGTTGGGGAGTAGAGAGGAGGGCGTTGTTAGGGTTTACTTCAAGGGTTTGGTGAGCGAGGAAAACGTGAGGGGGCAGAATGTCGTGTTGTCTGGGATCGGGGTTGCGATTTGTGACCTAGGCGATAATCTGATATTCGAGGTTTCTAAGTCGCTCGTTGGGAATGACACTAGCAAGGTCGCTGCAGAGATTAAGGCTTTAATTGAGGCTTTCAATGCCGCCATTGCTTTGGACTTGAAGCGCGTCGTTTATTGCTGCGATTATTATCCCCTTTTCCAATTTGTGAGTGGAAAATGGCCTGCAAAACAGCGGAAGATTGCTATGTTGGTTGATCAAGTGGATCTGCTTCAAAGGAAGTTTTCATACTGCAATCCAAGGCTTGTGGCCAGACATAATGTCAAGTTTGCATTTAAGCTTGCAAGAGATGCCATTGAGTCTCAGTCCACGAGGCCTGCGGAATCTGGGAGTAGGAGGAGTTTGAATGAAACTTGTGTCATATGTTTGGAGGAAACTGATGCCAGTCAGATTTTTTCAGTTGATGGCTGTCAACACCGCTATTGCTTCTCGTGCATGAAACAACATGTGGAGGTGAAGTTACTTCATGGAATGGTGCCAAAGTGCCCTCACGAGGGGTGCAAGTATGAGCTTCTAGTCAACAGCTGCCAGAAGTTCTTGACTCAAAAGTTAACTGAGACCATGCAGCAACGAAAATTGGAAGCTTCAATTCCTGTTGCTGAAAAAATTTATTGCCCTTATCCTAGATGCTCTGCATTAATGTCAAAAACTAAGGTTTTAGAGTACTCGAGAAATATCATCGATCAATCTGAACAATCTGGAGTCAAGAAATGCCTAAAATGTCATGGTCTTTTCTGTTTTAATTGCAAGGTCCCTTGGCATAGTGGTATGACATGTAATACTTACAAAAGGATGAATCCTAATCCTCCTGCAGAAGATTTGAAGCTGAAGTTTCTTGCATCAAGGAGCCTATGGCGACAGTGTCTGAAGTGTAACCATATGATTGAACTTGCTGAAGGTTGCTATCACATGACTTGCAGATGTGGTTACGAATTTTGCTATAATTGTGGAGCCGAGTGGAAGGACAAAAAAGCAACATGTGCATGCCCTCTTTGGGCCGAGGACAATATTTGGTTAGATGATCACGAGGAAGAGTTGGAAGATGATGATGATGATGATTATAACTCTGATTATTCTGATGGTTATTATTATTAA 1398 0.4478 MKDREHSEAETQKMREELCRRIHDEKVAREISTIPEKDWEQWGDNFEKPFREGSSSSLGSREEGVVRVYFKGLVSEENVRGQNVVLSGIGVAICDLGDNLIFEVSKSLVGNDTSKVAAEIKALIEAFNAAIALDLKRVVYCCDYYPLFQFVSGKWPAKQRKIAMLVDQVDLLQRKFSYCNPRLVARHNVKFAFKLARDAIESQSTRPAESGSRRSLNETCVICLEETDASQIFSVDGCQHRYCFSCMKQHVEVKLLHGMVPKCPHEGCKYELLVNSCQKFLTQKLTETMQQRKLEASIPVAEKIYCPYPRCSALMSKTKVLEYSRNIIDQSEQSGVKKCLKCHGLFCFNCKVPWHSGMTCNTYKRMNPNPPAEDLKLKFLASRSLWRQCLKCNHMIELAEGCYHMTCRCGYEFCYNCGAEWKDKKATCACPLWAEDNIWLDDHEEELEDDDDDDYNSDYSDGYYY 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00639 465 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 2 438 - -
Gma12g00639 465 Pfam Reverse transcriptase-like 82 199 IPR002156 GO:0003676|GO:0004523
Gma12g00639 465 SUPERFAMILY RING/U-box 303 365 - -
Gma12g00639 465 ProSiteProfiles Zinc finger RING-type profile. 220 264 IPR001841 -
Gma12g00639 465 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 2 438 IPR031127 GO:0004842|GO:0016567
Gma12g00639 465 ProSitePatterns Zinc finger RING-type signature. 238 247 IPR017907 -
Gma12g00639 465 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 214 300 IPR013083 -
Gma12g00639 465 MobiDBLite consensus disorder prediction 446 465 - -
Gma12g00639 465 ProSiteProfiles TRIAD supradomain profile. 216 440 IPR044066 -
Gma12g00639 465 Pfam IBR domain, a half RING-finger domain 379 428 IPR002867 -
Gma12g00639 465 Pfam IBR domain, a half RING-finger domain 289 360 IPR002867 -
Gma12g00639 465 Gene3D - 358 461 - -
Gma12g00639 465 SUPERFAMILY RING/U-box 374 437 - -
Gma12g00639 465 Gene3D - 66 208 IPR036397 GO:0003676
Gma12g00639 465 SMART ibrneu5 287 360 IPR002867 -
Gma12g00639 465 SMART ibrneu5 361 428 IPR002867 -
Gma12g00639 465 SUPERFAMILY Ribonuclease H-like 87 200 IPR012337 -
Gma12g00639 465 SUPERFAMILY RING/U-box 218 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00639 Gma-Chr12 5343062 5346615 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00639 44 419 C3H Transcription Factor Family AT2G19610 32.546 1.37e-64 212
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00639 - - gmx:100786163 920.613
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00639 12 5343062 5346615 Gma12g00639 12 5343062 5346615 ECH
Gma12g00639 12 5343062 5346615 Gma11g01344 11 11676601 11680710 GST