Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00633 ATGGATTTGGTACCGAGCGTCAAGGAAAAATTAAACTATTTTCGTATAAAAGAGCTCAAAGATGTGCTCACTCAGTTACACCTTTCAAAGCAGGGAAAGAAGCAGGATCTTGTTGATCGCATATTATCTGTTCTCTCAGATGAACAAGTTTCAAAAATCTGGGCTAAGAAGAATGCTGGTGGTGGAAAAGAACAGGTAGCAAAATTAGTGGATGATACATATAGGAAAATGCAGATATCAGGGGCCACTGATCTAGCTTCTAAGGGACAGGGTGCATCAGATAGCAGTAGTGTAAAGGTTAAAAGTGAATTTGATGATGCCTTTCAACCAGATGTGAAGATTCGCTGTCTATGTGGAAGTAGATTGGAAACAGAGAATTTGGTCAAGTGTGATGATGCAAGATGCCATGTGTGGCAACACATCAGTTGCGTTATTATTCCAGAGAAACCTACTGAAGGCATCCCACTAGTTCCTGATAAATTTTATTGTGAACTCTGTCGTCTCACTCGTGCAGATCCATTTTGGGTTTCAGTGGCGCACCCTTTGCATCCTGTGAAGTTGACCACAACCAGTAATCCAACTGATGGAAACAACCCAGTGCAGAGTGTGGAGAGAACATTTCAACTGACTAGAGCTGACAAGGACTTGGTATCAAAACCAGAATTTGATGTTGAGGCTTGGTGTATGCTCCTGAACGACAAGGTTCCATTCAGGATGCAATGGCCACAGTATACAGACCTGCAGGTCAATGGTGTTCCTGTTCGTGCAACTAACAGACCTGGTTCACAGTTGCTTGGGGCTAATGGTCGGGATGACGGTCCAATTATCACGCCATATACAAAAGATGGAATTAATAAGATTTCCTTAACAGGATGTGATGCTCGCATTTTTTGTTTAGGGGTTCGTATTGTTAAAAGGCGCAGTATGCAGCAGATCCTAAACTCAATCCCAAAGGAGTCTGATGGTGAGAAATTTGAAGACGCCCTTGCACGTGTCTGCCGTTGTGTTGGGGGTGGAAATGCAGTTGATGATGCTGATAGTGACAGTGATTTGGAAGTGGTTTCAGATACTTTCACTGTCAACCTTCGTTGTCCTATGAGTGGTTCAAGAATGAAGATTGCTGGAAGATTTAAACCCTGTATTCACATGGGTTGCTTTGATCTTGAAGTGTTTGTGGAAATGAACCAACGATCAAGGAAGTGGCAATGTCCTATATGTCTCAAAAACTATGCGTTGGAGAATATCATCATTGACCCTTATTTCAATCGCATCACTTCTATGATGATGAATTGTGGCGAAGAAATTGCAGAGATTGAGGTGAAGCCTGATGGTTCTTGGCGTGTTAAGGTAAAGAGTGAAAGTGAACGCCTGGAATTAGGGAATCTAGCACAGTGGCGCCTTCCTGATGGAACCCTCTGTGTGTCAACTGCTGGAGATGTCAAGAGAGTGGATACATTGAAGCAGGTTAAACAGGAAGGTGTTTCAGACTGTCCGGCTGGTTTAAAACTTGGCATAAGGAAGAATCGCAATGGAGTTTGGGAAGTCAGTAAACCTGAGGGCACAAACACCTCTTCTGGTAATAAATTGAAAGGGGCTTTTGGAAATCCCGAACAGGTTGTTATTCCAATGAGCAGCAGTGCCACTGGAAGTGGTCGGGATGGTGACGACCCTAGTGTAAATCAGGGTGGTGGTGGGCATATTGACCATTCCACTACAAATGGGATTGAGATGGATTCTTTGTGTCTCAATAATGTTGATTTAGCATATGAATATAATGAACCCAACACTTCTGCTCAGGTGGGTGGTGCAGAAGTTATTGTTCTTAGTGATTCTGAAGAAGACAATGATTTGTTGGTATCTCCTGCAATTGCTTATAAGAACAACAGAAATGATGCTACAGATGGTTACTCTGTACCACCACCTGTAATTGTTGATTCATATACTGAAGAGCATAATCTTGGTGGAAATTCATGCTTAGGACTCTTTCCTAATGATGATGAATTTGGGATGTCTTCCCTGTGGTCATTGCCTTCTGGAAGTCAGGCTGGTCCTGGATTCCAGTTATTTGGTTCTGATGCGGATGTGTCTGATGCGTTGGTCCATCTGCAGCATGGTCCTATGAATTGCTCCTCGTCACTAAATGGTTATGCATTGGCTCCCAATACTGCTTTGGGATCTGGTAGTATCTTGCAAGAGTCCTCTGCTGGTCGGTCAGATGCTGATTTGAATGGTGGTTTGGTGGACAATCCTTTGGCCTTTGGTGGAGATGATCCCTCACTTCAGATTTTTCTCCCCACAAGACCAGCAGATTCATCCATGCACAATGAATTGAGAGATCAAGCAAGTGTGGCTAATGGTGTCTGCACTGAGGAGGATTGGATATCCCTCAGTCTTGGAGGTGGGACTGGTGGTAACAATGGTGATGCTTCCACTCAAAATGGGTTGAATTCTAGACATCAAATCCCAACCAGAGAAGGTGCCACGAATACTTTGGATGATACTGCTTCTTTACTCCTTGGGATGAATGATGTTAGATCTGACAGGGCAAGAAGGCAAAGATCAGATAGCCCTTTCTCCTTTCCTCGCCAAAAACGTTCAGTAAGGCCCCGCTTGTACCTTTCCATTGATTCAGATTCAGAGTAA 2643 0.4351 MDLVPSVKEKLNYFRIKELKDVLTQLHLSKQGKKQDLVDRILSVLSDEQVSKIWAKKNAGGGKEQVAKLVDDTYRKMQISGATDLASKGQGASDSSSVKVKSEFDDAFQPDVKIRCLCGSRLETENLVKCDDARCHVWQHISCVIIPEKPTEGIPLVPDKFYCELCRLTRADPFWVSVAHPLHPVKLTTTSNPTDGNNPVQSVERTFQLTRADKDLVSKPEFDVEAWCMLLNDKVPFRMQWPQYTDLQVNGVPVRATNRPGSQLLGANGRDDGPIITPYTKDGINKISLTGCDARIFCLGVRIVKRRSMQQILNSIPKESDGEKFEDALARVCRCVGGGNAVDDADSDSDLEVVSDTFTVNLRCPMSGSRMKIAGRFKPCIHMGCFDLEVFVEMNQRSRKWQCPICLKNYALENIIIDPYFNRITSMMMNCGEEIAEIEVKPDGSWRVKVKSESERLELGNLAQWRLPDGTLCVSTAGDVKRVDTLKQVKQEGVSDCPAGLKLGIRKNRNGVWEVSKPEGTNTSSGNKLKGAFGNPEQVVIPMSSSATGSGRDGDDPSVNQGGGGHIDHSTTNGIEMDSLCLNNVDLAYEYNEPNTSAQVGGAEVIVLSDSEEDNDLLVSPAIAYKNNRNDATDGYSVPPPVIVDSYTEEHNLGGNSCLGLFPNDDEFGMSSLWSLPSGSQAGPGFQLFGSDADVSDALVHLQHGPMNCSSSLNGYALAPNTALGSGSILQESSAGRSDADLNGGLVDNPLAFGGDDPSLQIFLPTRPADSSMHNELRDQASVANGVCTEEDWISLSLGGGTGGNNGDASTQNGLNSRHQIPTREGATNTLDDTASLLLGMNDVRSDRARRQRSDSPFSFPRQKRSVRPRLYLSIDSDSE 880
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00633 880 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 336 448 IPR013083 -
Gma12g00633 880 Gene3D SAP domain 3 57 IPR036361 -
Gma12g00633 880 CDD PHD_Bye1p_SIZ1_like 115 166 - -
Gma12g00633 880 Pfam MIZ/SP-RING zinc finger 360 408 IPR004181 GO:0008270
Gma12g00633 880 MobiDBLite consensus disorder prediction 844 858 - -
Gma12g00633 880 PANTHER E3 SUMO-PROTEIN LIGASE SIZ1 9 812 - -
Gma12g00633 880 SUPERFAMILY SAP domain 1 58 IPR036361 -
Gma12g00633 880 ProSitePatterns Zinc finger PHD-type signature. 116 166 IPR019786 -
Gma12g00633 880 MobiDBLite consensus disorder prediction 514 571 - -
Gma12g00633 880 MobiDBLite consensus disorder prediction 799 836 - -
Gma12g00633 880 Pfam PHD-finger 115 167 IPR019787 -
Gma12g00633 880 ProSiteProfiles Zinc finger SP-RING-type profile. 347 430 IPR004181 GO:0008270
Gma12g00633 880 PANTHER ZINC FINGER MIZ DOMAIN-CONTAINING PROTEIN 9 812 - -
Gma12g00633 880 SMART PHD_3 115 167 IPR001965 -
Gma12g00633 880 SMART sap_9 11 45 IPR003034 -
Gma12g00633 880 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 104 172 IPR013083 -
Gma12g00633 880 MobiDBLite consensus disorder prediction 539 555 - -
Gma12g00633 880 MobiDBLite consensus disorder prediction 799 880 - -
Gma12g00633 880 Pfam SAP domain 12 42 IPR003034 -
Gma12g00633 880 SUPERFAMILY FYVE/PHD zinc finger 108 170 IPR011011 -
Gma12g00633 880 MobiDBLite consensus disorder prediction 515 531 - -
Gma12g00633 880 ProSiteProfiles SAP motif profile. 11 45 IPR003034 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00633 Gma-Chr12 5299691 5310080 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Gma12g00633 PHD 7.3e-07 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00633 - - gmx:100793735 1695.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00633 12 5299691 5310080 Gma12g00633 12 5299691 5310080 ECH
Gma12g00633 12 5299691 5310080 Gma11g01351 11 11736875 11747304 GST
Gma13g02924 13 43799337 43807855 Gma12g00633 12 5299691 5310080 PCT
Gma12g01612 12 36062425 36074203 Gma12g00633 12 5299691 5310080 PCT
Gma12g00633 12 5299691 5310080 Gma13g02924 13 43799337 43807855 PCT
Gma12g00633 12 5299691 5310080 Gma12g01612 12 36062425 36074203 PCT