Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00630 ATGGAAATTGATCTGAACCATGAAGTGACTGAGGCTGAGAAGAATGCATTCTGTGATAGGGAATGTGAGAAAGGTGCTGGTGCTGGTGCTGGTATTacttgttggtcctcttccacttgttcgtcctcttcAGCAGCTTGTGTGTCCTCTTCTTACCTTGAGCTTTGGCATGCTTGTGCTGGCCCTCTCACTTCTCTTCTCAAGAAAGGAAATGTGGTTGTCTATTTTCCACAAGGTCACTTAGAACAGGTTGCATCTTTCTCTCCTTTCACACCGTTGGAGATTCCCACCTATGATCTTCAGCCACAGATCTTTTGCAGGGTTGTCAATGTCCAACTACTTGCCAACAAGGAGAATGATGAGGTTTATACACAGGTTACTTTGCTTCCTCAGCCGGAGTTGGAAGGGATGTATTCAGAGGGCAAAGAACTCGAGGAATTGGGAGCAGAAGAGGATGGAGATGAAAGATCACCAACTAAATCAACCCCTCACATGTTCTGCAAAACACTAACTGCCTCTGATACCAGCACACATGGGGGCTTTTCTGTTCCTCGTAGAGCTGCTGAAGACTGTTTTCCTCCTTTGGACTATAAGCAGCAGAGGCCATCACAAGAGCTTGTTGCCAAAGACCTGCATGGTGTGGAGTGGAAATTTCGTCACATTTACAGAGgtcagccaaggcggcatctactcactactggctggagcatttttgtaagccaaaagaatcttgtctctggtgatgcagtgctcttcctaagGGGTGAAAATGGTGAACTGAGATTGGGAATCAGAAGAGCTGTTAGACCTAGAAATGATCTTCCTGAATCGGTTATCGGTAGCCAGAACTGCTATTCCAATGTCCTTTCTTCTGTGGCAAATGCAATATCCACCAAAAGCAAGTTTCATGTTTTCTACAGTCCAAGAGCAAGTCACGCAGACTTTGTTGTTCCCTACCAAAAGTATGTTAAAAGCATCAAGAATCCAGTGAGCATTGGAACAAGATTTAAAATGAGATTTGAAATGGACGAATCTCAAGAGAGAAGGTGTAGTAGTGGGACGTTGATTGCAACGAGTGATTTGGATCCTTATAGATGGGCCAAATCAAAATGGAGGTGTTTGATGGTCAGATGGGATGAGGATATTGAAACTAATCATCAAGACCGAGTATCTCCATGGGAGATTGATCCTTCTGCTCCTCTGCCCCCCTTGAGCATTCAGTCTTCTCCAAGACTGAAGAAACTGCGGACAGGTCTACAGGTTGCCTCACCTAGTCACCTCATCACTGCAGCACGAGGCAGTGGATTGGTAGGCTTTGAGGAGTCTGTAAGATCACCCAAGGTCTTGCAAGGTCAAGAAAATGCAGGTTTTGTGTCATTCTACTACGGATGCGACACAGTAACCAAGCCACCAGGTTTTGAGATGAGCTCTCCGAGTCATCCAAATCTTGGATCAGCTGAAGTAAGAAAGGTTTCCTCTTCTGAGCTGAATAGTGTCCACCCTTTCAGTTATGCAGGCTTTGTGGAAACTAACAGGTTTCCGAGGGTCTTGCAAGGTCAAGAAATATGTTCATTGAAATCCCTGACAGGAAAGGTTGATTTGAACCTTGGTGCTTGGGGAATGCCCAATCTAAGTTGCACAACTTTCAACCTCCACCAGGCAACCAAACCAAACTTTCAACCTTCATTGTTTCCTTACGGGGATATTCACCAAGCCGGTCAAGCTAGCTTGTTTTGCTCAAAATCCACCACTTTCCAGAGAGAAAATGTCCCATTTAACAAGCCATCCACTCAGGCAGGGATCATTGTAAATGAAGTTGGAAGATCAGATCTCCCAAATGAGCATAAGCTGCAGGACAATATTTCTTCTGCTGCAAATATGGGGGTTTCTAATGACAACAATGTCCAGGGAAAGGTAAATGCCTGCAAACTATTCGGGTTTTCTTTGTCTGGGGAAACTACTGCCCAAAATTTACAGAACTCTGCTAAAAGGAGCTGCACCAAGGTTCATAAGCAAGGCAGCTTAGTTGGAAGAGCTATTGATCTTTCAAGACTTAGCGGCTACAATGATCTGCTAAGTGAACTAGAGAGACTGTTTAGCATGGAAGGCCTTCTAAAAGATCCTGATAAGGGATGGAGGATTCTCTACACTGACAGTGAGAATGACATAATGGTTGTGGGGGATGATCCTTGGCATGAGTTTTGTGATGTGGTGTCCAAGATCCACATATACACCCAAGAAGAAGTGGAAAAGATGACAATTGGGATGATCAGTGATGATACTCATAGCTGTTTGGAAGAGGCACCAGTGATTATGGAGGCTTCAAAGTCTTCCTCGGTGGGTCAGCCAGATTATTCTCCAACGGCTGTTAGAGTCTAA 2379 0.422 MEIDLNHEVTEAEKNAFCDRECEKGAGAGAGITCWSSSTCSSSSAACVSSSYLELWHACAGPLTSLLKKGNVVVYFPQGHLEQVASFSPFTPLEIPTYDLQPQIFCRVVNVQLLANKENDEVYTQVTLLPQPELEGMYSEGKELEELGAEEDGDERSPTKSTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYKQQRPSQELVAKDLHGVEWKFRHIYRGQPRRHLLTTGWSIFVSQKNLVSGDAVLFLRGENGELRLGIRRAVRPRNDLPESVIGSQNCYSNVLSSVANAISTKSKFHVFYSPRASHADFVVPYQKYVKSIKNPVSIGTRFKMRFEMDESQERRCSSGTLIATSDLDPYRWAKSKWRCLMVRWDEDIETNHQDRVSPWEIDPSAPLPPLSIQSSPRLKKLRTGLQVASPSHLITAARGSGLVGFEESVRSPKVLQGQENAGFVSFYYGCDTVTKPPGFEMSSPSHPNLGSAEVRKVSSSELNSVHPFSYAGFVETNRFPRVLQGQEICSLKSLTGKVDLNLGAWGMPNLSCTTFNLHQATKPNFQPSLFPYGDIHQAGQASLFCSKSTTFQRENVPFNKPSTQAGIIVNEVGRSDLPNEHKLQDNISSAANMGVSNDNNVQGKVNACKLFGFSLSGETTAQNLQNSAKRSCTKVHKQGSLVGRAIDLSRLSGYNDLLSELERLFSMEGLLKDPDKGWRILYTDSENDIMVVGDDPWHEFCDVVSKIHIYTQEEVEKMTIGMISDDTHSCLEEAPVIMEASKSSSVGQPDYSPTAVRV 792
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00630 792 SUPERFAMILY CAD & PB1 domains 667 743 - -
Gma12g00630 792 Pfam B3 DNA binding domain 166 267 IPR003340 GO:0003677
Gma12g00630 792 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 9 780 IPR044835 GO:0003677|GO:0006355|GO:0009725
Gma12g00630 792 SMART B3_2 166 268 IPR003340 GO:0003677
Gma12g00630 792 Pfam Auxin response factor 292 374 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Gma12g00630 792 ProSiteProfiles PB1 domain profile. 664 748 IPR000270 GO:0005515
Gma12g00630 792 SUPERFAMILY DNA-binding pseudobarrel domain 158 277 IPR015300 -
Gma12g00630 792 ProSiteProfiles B3 DNA-binding domain profile. 166 268 IPR003340 GO:0003677
Gma12g00630 792 Gene3D - 164 268 IPR015300 -
Gma12g00630 792 PANTHER AUXIN RESPONSE FACTOR 9 780 - -
Gma12g00630 792 Gene3D - 660 753 - -
Gma12g00630 792 CDD B3_DNA 164 266 IPR003340 GO:0003677
Gma12g00630 792 Gene3D - 329 400 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00630 Gma-Chr12 5270323 5277237 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00630 48 792 B3 DNA Binding Superfamily AT5G60450 61.609 0.0 855
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Gma12g00630 B3 1.3e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00630 - - gmx:100783513 1566.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00630 12 5270323 5277237 Gma12g00630 12 5270323 5277237 ECH
Gma12g00630 12 5270323 5277237 Gma11g01354 11 11764968 11771172 GST
Gma13g02923 13 43789998 43795584 Gma12g00630 12 5270323 5277237 PCT
Gma12g01613 12 36077843 36084183 Gma12g00630 12 5270323 5277237 PCT
Gma12g00630 12 5270323 5277237 Gma13g02923 13 43789998 43795584 PCT
Gma12g00630 12 5270323 5277237 Gma12g01613 12 36077843 36084183 PCT