Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00625 ATGATGTCTGAAGAAACCTTTTCTGTTCCTCCCAACTCCACCATTAGAGCCACCTCCTTGGTTCATCATGTTCATGTTCAACCCCCAAGCCCAAACCCTAATTCAAATCCAGCTAAGAGAAGGAGAAGTCTACCCGGAACACCAGatccagatgcagaagtggtggctctttcacctaaGTCCCTAATGGCCACCAACCGTTTCTTATGTGAAGTTTGCAACAAGGGTTTTCAGAGAGACCAGAATTTGCAGCTGCATAGACGTGGACACAACCTTCCATGGAAACTGAAGAAGAGAACGAACAATGATCAAGTAAGGAAGAAGGTGTACGTGTGCCCTGAGAAGAGTTGTGTGCACCATGACCCCTCAAGAGCCTTGGGGGACTTGACAGGGATAAAGAAGCACTATAGCCGAAAGCATGGCGAGAAGAAGTGGAAGTGTGACAAGTGCTCCAAGAAATACGCTGTTCAATCCGATTGGAAGGCCCATAGCAAGATTTGTGGGACTAGAGAGTACAAATGTGACTGTGGCACACTTTTCTCCAGGAAGGACAGCTTCATAACGCATAGAGCTTTTTGTGACGCTTTGGCTGAAGAAAGTGCGAGGGTAACAACAATTCCAGCAGCTTTAAGCAACTTGAGAAGTGATCACCATCATCATTTGACCAATGCTCAAGCTTCGAGAATCCCTCAGATTTTTTCAGGGTTTCACTCATCAGATCAATTCGGTGGTGGCTCATCAGAAGCATTATTGGCGAATCATCATCATCAACAAAAGCTAAGGCTACCACTATGGCTAGATCACCACCAAGTCAATAATACTCAAGTACTTCACCACACTCTTGACAACTTCTCAACCGAACCGAGTGCTTTCACTTCAGGAACAAACTCTGTGCCTCATGATCTAGTACAAACAATGGACATGTTTGGGCCACAGACACAGTTTGTGAATTACCGTTACCCAGAAGCATCATTTGGAGGTGGCAATGCCAACTTGTCTGTGCTACCGCCACATGGACTGAAGCAAGAACAAGAAGAAAACAAACAACACTTGTCGCATAGCGGAGCCTCTTCTAATAACTTGTACTTGAGTAATAGTATTCAGAACCCACCTCATCATCACTACATGTCAGCCACCACACTGTTGCAGAAAGCGGTTCAAATGGGTTCTACAAGGATCAGCGACAACGTATTTGGCTCCATCGTGGGTACCACCAACAGAAACAACAACAACGACAACAACACCAACCTTGAGGTTCAGAAGCTGAACGAGTTGGTGAGTATGGAAGCTGGGTGCAACAACAACCTTGGAGGTGGTGGTGATGGGTATTTATTATATGACTCGTTTGGGGTTGTGAATGGCACCGATAAGGGTTTGGAGCACATGGTGATGCCGGTGGATGAAGAGACACAACAAGAATCAATTGTGGGAAACTCACTATGCTCAAATAACAAAAATCAACTTGGTTTAACAAGAGACTTCTTGGGTGTTGGAGATAATAATAATAATCTTAACCCTATAAGAAGACCTTTTTTTCAACAAGACCTTGTTGAATTTAATGCAATGGGGTCAGCCTCAGCCTCAGTCATGAACCTGCAGAGCCAGTACGGTGGACACTACTGCTAG 1626 0.4397 MMSEETFSVPPNSTIRATSLVHHVHVQPPSPNPNSNPAKRRRSLPGTPDPDAEVVALSPKSLMATNRFLCEVCNKGFQRDQNLQLHRRGHNLPWKLKKRTNNDQVRKKVYVCPEKSCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYKCDCGTLFSRKDSFITHRAFCDALAEESARVTTIPAALSNLRSDHHHHLTNAQASRIPQIFSGFHSSDQFGGGSSEALLANHHHQQKLRLPLWLDHHQVNNTQVLHHTLDNFSTEPSAFTSGTNSVPHDLVQTMDMFGPQTQFVNYRYPEASFGGGNANLSVLPPHGLKQEQEENKQHLSHSGASSNNLYLSNSIQNPPHHHYMSATTLLQKAVQMGSTRISDNVFGSIVGTTNRNNNNDNNTNLEVQKLNELVSMEAGCNNNLGGGGDGYLLYDSFGVVNGTDKGLEHMVMPVDEETQQESIVGNSLCSNNKNQLGLTRDFLGVGDNNNNLNPIRRPFFQQDLVEFNAMGSASASVMNLQSQYGGHYC 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00625 541 SMART c2h2final6 68 90 IPR013087 -
Gma12g00625 541 SMART c2h2final6 110 140 IPR013087 -
Gma12g00625 541 SMART c2h2final6 145 165 IPR013087 -
Gma12g00625 541 ProSitePatterns Zinc finger C2H2 type domain signature. 70 90 IPR013087 -
Gma12g00625 541 SUPERFAMILY beta-beta-alpha zinc fingers 67 165 IPR036236 -
Gma12g00625 541 MobiDBLite consensus disorder prediction 24 51 - -
Gma12g00625 541 Gene3D Classic Zinc Finger 123 201 - -
Gma12g00625 541 MobiDBLite consensus disorder prediction 342 369 - -
Gma12g00625 541 Gene3D Classic Zinc Finger 47 121 - -
Gma12g00625 541 PANTHER PROTEIN INDETERMINATE-DOMAIN 13-RELATED 27 503 - -
Gma12g00625 541 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 27 503 - -
Gma12g00625 541 MobiDBLite consensus disorder prediction 351 369 - -
Gma12g00625 541 ProSiteProfiles Zinc finger C2H2 type domain profile. 68 90 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00625 Gma-Chr12 5210681 5213421 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00625 38 213 IDZ Gene Family AT3G45260 84.659 5.51e-113 341
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gma12g00625 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00625 K25870 - gmx:100781896 1057.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00625 12 5210681 5213421 Gma12g00625 12 5210681 5213421 ECH
Gma12g00625 12 5210681 5213421 Gma11g01359 11 11839451 11841738 GST
Gma13g02917 13 43734906 43737745 Gma12g00625 12 5210681 5213421 PCT
Gma12g01619 12 36214065 36216411 Gma12g00625 12 5210681 5213421 PCT
Gma12g00625 12 5210681 5213421 Gma13g02917 13 43734906 43737745 PCT
Gma12g00625 12 5210681 5213421 Gma12g01619 12 36214065 36216411 PCT