Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00613 ATGGCTTCCTCCAACACTcccaaacccgaaaataagaagagtaccaaaaaatccgaaatctccaaagccgaaaagaagaaaaccaaaaacgctgaaatccccaaaaccgaTGGCAAAACGAAGAAGAACAAAGAAATCTCACAAGAGGAGAACAAGAAGAAGATTAAGAAGGCCAAGCTCAGCAACGGCACTTCAAAACAGCGAGACGAGGGATCCAAAAAGGGAGTAGCAGCAGAAGGAAACGGAGAAGAGGCGAAAATGAACGTGTTTCCGATGAATCGCATCAGGACGATGATTAAGGGCGAAGATCCCGAAATGCGTGTTTCTCAGGAAGCATTGTTTGCCATCAACAACACTGTGGAAAAGTTCCTTGAGCAGTTCACGCAGGACGCTTATGCCTTTTGTGCTCAGGACCGCAAGAAATGCCTCAGCTATGATCACCTAGCACATGTTGTAAGTAAGCAAAGGAGATATGACTTTCTCTCTGATTTTGTTCCTGAGAGAGTAAAAGCTGAGGATGCATTAAGAGAGAGAAGTGCAGCAGGAAAAGGAGGAAGTTAA 561 0.3779 MASSNTPKPENKKSTKKSEISKAEKKKTKNAEIPKTDGKTKKNKEISQEENKKKIKKAKLSNGTSKQRDEGSKKGVAAEGNGEEAKMNVFPMNRIRTMIKGEDPEMRVSQEALFAINNTVEKFLEQFTQDAYAFCAQDRKKCLSYDHLAHVVSKQRRYDFLSDFVPERVKAEDALRERSAAGKGGS 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00613 186 Gene3D Histone, subunit A 4 167 IPR009072 GO:0046982
Gma12g00613 186 MobiDBLite consensus disorder prediction 1 89 - -
Gma12g00613 186 MobiDBLite consensus disorder prediction 10 80 - -
Gma12g00613 186 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 90 152 IPR003958 -
Gma12g00613 186 SUPERFAMILY Histone-fold 89 168 IPR009072 GO:0046982
Gma12g00613 186 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 6 183 - -
Gma12g00613 186 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR AND ARCHAEAL HISTONE FAMILY PROTEIN, EXPRESSED 6 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00613 Gma-Chr12 5135718 5137873 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00613 58 151 CCAAT-HAP5 Transcription Factor Family AT1G07980 33.981 2.24e-16 71.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Gma12g00613 CBFD_NFYB_HMF 2.4e-15 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00613 - K03506 gmx:100500588 304.293
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00613 12 5135718 5137873 Gma12g00613 12 5135718 5137873 ECH