Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00604 ATGGCGGAACCTCTCTCAAACACCGAACTCTCTTCTTCCAAAACCCTGGACCCAACCAACGGTCACGATTCCACTTCGGAACCGCATCAAACGGCTCCGGAAGACTCTCAGCTCAATCGAGAAGACGACGTTGTTCCAACCGCGAAACGGAAGAGGGACGACGACGTCGAAGACCGTTCGCTGCATCCGCTGTGGAAGACCAGCCTATGCTCTTACTTCCGGAGCCACAACGGATCGTGCAGCCACGGCGGCGCTTGCCGATACGCGCACGGCGAGGAGGAGCTCCGCCCCCGCCCCGACAACACGTGGGACCCGACCTCCGAGCGCGCGAAGAAAGCACTGAAGACCGAGTCGGACGAAAAGCGCGCCGTCTCGGAGGAAGTGATGATGACGGAGGCCGTCGTGGACGATGGTGATGACGGTTGTGGCGCGAATCACGCGCTTAACATATGCTTGGTGCATTTGCCGCGGAAATGGAGCTCCGAGAATTTGAGGACTTTTCTCAGCGAACAGGGCATACCTTTTAAGCATGCTAAGAAAAAGAAAGGCATGATGATTGGTTTTGTTACTTTTGAAGATGAAGAACAGTTGAAGAGTTCAACAATGGAATTAGAAGGAAAATCAATTGGCAACAAAACGGTAAAGGTTGCTAATGTTCTTCCTCGGTCATTCGAAAAGAAAAGTAATGCCATTGTTGCATCCCGTCAAGAATTAGATGAGGAAAATGCAGGGGTTGATGTTGCTTCAAGTGGGACTTTGGATGGTGAAACAAATAATGATAACTTGGCAAAGACAAGAAATGTGCGTGATGCAGTGACTCCTCTAGCTCATATGGCCTATGCTGATCAGTTGGAGCAGAAAACAAGCTCCCTCATGCAGATTCTCAAAAAACTTACTAGAAATGCTCGTAAAGCTTGTCCAAATGGCGTTTCTCTTCCTGAATGGATTCTCAAGTCTAGGGAAATAGGTAGTGGTCTTCCGTGCAAACTAGAGGGTATTATTGCATCCCCTATTGTAAATGGATACCGTAACAAGTGTGAGTTTTCTGTTGGATATTCTCTGGAAGGCAAAGTGACAGTAGGCTTCATGCTTGGAAACTTCAGCAGGGAAGGTGTAACAGCAGTTGAGGAAGCAGTGGACTGCCCAAACGTTTCAACAGTTGCTTGCAAATATGCTACAATCTTTCAGGAATTTCTACAGGACAGTGATTTACCAGTTTGGAACAGATTTAAAAATACTGGTTTTTGGCGTCAATTGACGGTTCGAGAAGGGAGAACAAATGGGAATGTTGTTGATGCTGAAACGTTTAGTGGTGTTGCAGAGGTCATGCTTATTGTGCAGGTTTCTACTGCAAGCTTTGATGATGCAAAAGTAGCTGCTGAGTTCAAGAGGCTTGCTCAGGCATTTGTTGCCGGAGCTACTTCACATTGCCCAATATTACCCCTTACAGCTCTGGTTGTTCAGGATCACCAAGGAATATCCAATGTGGCGCCAGCTGATGCACCACTGCATTCACTTCCCATTCCTGAAGCAGCTGGTGATCCTGAGGTGGATGAAAATAATAATGCCAAGGATGTAAGAATCCATGATCATATCAACAATCTCCAGTTTTCTATATCTCCAACAGCATTTTTTCAGGTTAACACTCTTGCTGCTGAGAAGTTGTATTCACTTGCTGGAGATTGGTCATGCTTAGGTCCTGACACACTGCTATTTGATATATGCTGTGGGACAGGAACAATTGGCCTGACATTAGCACATCGAGTTGGTATGGTGATTGGAATTGAAATGAATGCTTCTGCTGTATCTGATGCGCATAGGAATGCTGAGATTAATGGCATAAAAAACGTTAAATTTATATGTTCGAAGgcagaggacgtgatgggatctctgttaagggaatacctgaatgtgactaaggaacaagttgatgatcctaatatctctggaagtggcaatgacattcctaaggatagtgcctgcccagaacctgaaaattgtgaaatagcatctcgttgtccagaaaataacattgcagaagttggaagtgaggttcagaagggttgcacttgtgaacaagctgatgggatctctgaacaggctgaggacgtgatgggatctctgttaaggggtgatgctaatgtggccaaggaacaaagtgatgatccaaatgtctctggaagtagcaatgacattcctgtggatggtacctgcccagagcctgaaaatggtgaaattacatctcactcagaaaataataatgcagaagttggaggtgaggttcagaagggtATCAGTTCTGAAAATGGGAAGACTTCACTGCAACAGTTCAAAAATGTTGTTGCTATTGTTGATCCTCCACGTGCTGGACTTCATCCAACTGTGATCAAAGCTTTGAGAACTCATCCAGGCCTGCGGAGGCTTGTTTACATATCCTGTAATCCTGAAACTTTGGTGGCAAATGCTATTGAGCTTTGTACGCCATCCCCCGTAAAAATTGAGAAAGGAAATAAAGACAACAGAGGATGGAGAAACATGAGCAGTGCTGGTTTAGCACGGCACAGGGCCAAGTCTATGCCCATCTCAGAGGCATTCCATCCCGTAAAGGCTATGGCTGTTGATCTTTTTCCACATACTCCACACTGTGAATTGGTTATGCTTCTTGAGAGTTTACTGCAGGACCTCCTAAGAAGTGAAATCCGAAACGGGTCTTAG 2715 0.3882 MAEPLSNTELSSSKTLDPTNGHDSTSEPHQTAPEDSQLNREDDVVPTAKRKRDDDVEDRSLHPLWKTSLCSYFRSHNGSCSHGGACRYAHGEEELRPRPDNTWDPTSERAKKALKTESDEKRAVSEEVMMTEAVVDDGDDGCGANHALNICLVHLPRKWSSENLRTFLSEQGIPFKHAKKKKGMMIGFVTFEDEEQLKSSTMELEGKSIGNKTVKVANVLPRSFEKKSNAIVASRQELDEENAGVDVASSGTLDGETNNDNLAKTRNVRDAVTPLAHMAYADQLEQKTSSLMQILKKLTRNARKACPNGVSLPEWILKSREIGSGLPCKLEGIIASPIVNGYRNKCEFSVGYSLEGKVTVGFMLGNFSREGVTAVEEAVDCPNVSTVACKYATIFQEFLQDSDLPVWNRFKNTGFWRQLTVREGRTNGNVVDAETFSGVAEVMLIVQVSTASFDDAKVAAEFKRLAQAFVAGATSHCPILPLTALVVQDHQGISNVAPADAPLHSLPIPEAAGDPEVDENNNAKDVRIHDHINNLQFSISPTAFFQVNTLAAEKLYSLAGDWSCLGPDTLLFDICCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNVKFICSKAEDVMGSLLREYLNVTKEQVDDPNISGSGNDIPKDSACPEPENCEIASRCPENNIAEVGSEVQKGCTCEQADGISEQAEDVMGSLLRGDANVAKEQSDDPNVSGSSNDIPVDGTCPEPENGEITSHSENNNAEVGGEVQKGISSENGKTSLQQFKNVVAIVDPPRAGLHPTVIKALRTHPGLRRLVYISCNPETLVANAIELCTPSPVKIEKGNKDNRGWRNMSSAGLARHRAKSMPISEAFHPVKAMAVDLFPHTPHCELVMLLESLLQDLLRSEIRNGS 904
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00604 904 Pfam Methyltransferase domain 571 629 IPR025714 -
Gma12g00604 904 Gene3D - 58 98 - -
Gma12g00604 904 MobiDBLite consensus disorder prediction 242 261 - -
Gma12g00604 904 SUPERFAMILY RNA-binding domain, RBD 146 227 IPR035979 GO:0003676
Gma12g00604 904 MobiDBLite consensus disorder prediction 1 33 - -
Gma12g00604 904 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 273 888 IPR029063 -
Gma12g00604 904 SMART c3hfinal6 64 92 IPR000571 GO:0046872
Gma12g00604 904 PANTHER TRNA (URACIL-5-)-METHYLTRANSFERASE 80 889 IPR045850 -
Gma12g00604 904 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 65 92 IPR000571 GO:0046872
Gma12g00604 904 ProSitePatterns RNA methyltransferase trmA family signature 1. 785 817 IPR030390 -
Gma12g00604 904 Coils Coil 281 301 - -
Gma12g00604 904 Gene3D Vaccinia Virus protein VP39 749 889 IPR029063 -
Gma12g00604 904 MobiDBLite consensus disorder prediction 34 58 - -
Gma12g00604 904 CDD AdoMet_MTases 573 627 - -
Gma12g00604 904 ProSiteProfiles Zinc finger C3H1-type profile. 64 93 IPR000571 GO:0046872
Gma12g00604 904 SUPERFAMILY CCCH zinc finger 62 97 IPR036855 GO:0046872
Gma12g00604 904 PANTHER TRNA (URACIL-5-)-METHYLTRANSFERASE HOMOLOG A 80 889 - -
Gma12g00604 904 Gene3D Vaccinia Virus protein VP39 545 644 IPR029063 -
Gma12g00604 904 Gene3D - 343 544 - -
Gma12g00604 904 MobiDBLite consensus disorder prediction 95 123 - -
Gma12g00604 904 Gene3D - 144 236 IPR012677 -
Gma12g00604 904 MobiDBLite consensus disorder prediction 717 755 - -
Gma12g00604 904 MobiDBLite consensus disorder prediction 1 58 - -
Gma12g00604 904 ProSiteProfiles SAM-dependent methyltransferase RNA m(5)U-type domain profile. 271 891 IPR010280 GO:0006396|GO:0008173
Gma12g00604 904 CDD RRM_SF 150 216 - -
Gma12g00604 904 MobiDBLite consensus disorder prediction 719 733 - -
Gma12g00604 904 Pfam tRNA (Uracil-5-)-methyltransferase 773 826 IPR010280 GO:0006396|GO:0008173
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00604 Gma-Chr12 5074836 5081475 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gma12g00604 tRNA_U5-meth_tr 1.4e-08 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00604 K15332 - gmx:100777601 1766.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00604 12 5074836 5081475 Gma12g00604 12 5074836 5081475 ECH
Gma12g00604 12 5074836 5081475 Gma11g01649 11 17838045 17848954 GST