Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00603 ATGGGGATAACTGAAGAAACCACACATGTTCCTCCTCGGAAGCGACAGAATCTTCTTCTAGAGATACCCTCAAGAACAGAAGAGTGTTCTCAAGAATTTGTTGCTATCAAAATACCACCGACACCAAGTTCCAATCCCACTCCTACTCCAAAGAGAGTGAATTTTCTTGTGAGTTCTCACTCTGTTGATCCTCCAACATATAATTCTCCTGGGCCTTCAACATCAAGAAGCAAATCATCCATTAGAAGCCTGCTTCCAAAACTGAGCTTCAGGTATCGAACACCAATAGATATTGAAAAACCTAATGCTGCAGCTCCAGAAATTTCCTCTTCAGGCATTGGAGAAAAGTCTTCAATCTCAAGATCATTGTCTCTTACTAAGATATTTACTCCTAGGATTAAGAGAACGTCATCATTACCACTGGATGAAATTAGACAATCAAACAATGAATCTTCTCATGGTGGAAGTGTTGGTGGTCCCTTAAACAAAAGAGAAACCCAGCGGAAGATAGCTCGCTCTCTTTCAGTACCTGCCAACAACAAGGATAAAAGCATAAGGAGGATGGATTCATTTTTCCGTGTTGTTCCTTCCACTCCTCGAGTAAAAGAAGGAAATGAATTGTTGGCCACACCCACAACAAATGACACTGAAAACGAAGATGCTAATGGTGAAGATATAGCTGAAGAAGAGGCTGTGTGTAGAATATGTCTGGTTGATTTGTGTGAAGGAGGTGAGACCTTCAAGTTGGAATGCAGCTGTAAAGGTGAACTTGCTCTGGCTCACCAAGAATGTGCAATTAAATGGTTTAGTATAAAGGGTAACAAGACCTGCGATGTGTGCAAGGAGGAAGTTCGAAACTTACCTGTCACACTATTACGGATCCAAAGTGTTCGAAATCGGAATAATGGTGGAAATAGGTCTCAACTTGAAGATGTAAATGGATACAGAGTTTGGCAGGAAGTCCCAGTGCTTGTCATTGTTAGCATGCTTGCCTATTTCTGTTTCCTTGAGCAGCTATTGGTTGGAAAAATGGGAACTGGTGCAATTGCCATATCTCTTCCATTTTCCTGTGTATTGGGTCTACTCTCCTCCATGACATCATCAACAATGGTGAAGAGCAGGTTCATCTGGATTTATGCATCTGCTCAGTTTGCTCTGGTGGTTCTCTTTGCACACATATTTTACTCCGTGGTTCATGTGCAAGCAGTTCTGTCAATCCTTCTGGCTACATTTGCTGGCTTTGGTGTGGTGATGAGTGGAAGTTCTATTCTTGTGGAGTTTTTTAGATGGAGGAGAAGAGTGCAGGCTCTACAAGAGCAGCAACATGGCCCGGCAGCACAAAATCCTCGAACTCCAAACACGCCGCGTCCAGGTTCAGGGTCAGGTCCTTCCAATCACAGTCAACCTGTGGTGCAAAGTCAACAGAACTCAAATCAGAGCTGA 1443 0.4297 MGITEETTHVPPRKRQNLLLEIPSRTEECSQEFVAIKIPPTPSSNPTPTPKRVNFLVSSHSVDPPTYNSPGPSTSRSKSSIRSLLPKLSFRYRTPIDIEKPNAAAPEISSSGIGEKSSISRSLSLTKIFTPRIKRTSSLPLDEIRQSNNESSHGGSVGGPLNKRETQRKIARSLSVPANNKDKSIRRMDSFFRVVPSTPRVKEGNELLATPTTNDTENEDANGEDIAEEEAVCRICLVDLCEGGETFKLECSCKGELALAHQECAIKWFSIKGNKTCDVCKEEVRNLPVTLLRIQSVRNRNNGGNRSQLEDVNGYRVWQEVPVLVIVSMLAYFCFLEQLLVGKMGTGAIAISLPFSCVLGLLSSMTSSTMVKSRFIWIYASAQFALVVLFAHIFYSVVHVQAVLSILLATFAGFGVVMSGSSILVEFFRWRRRVQALQEQQHGPAAQNPRTPNTPRPGSGSGPSNHSQPVVQSQQNSNQS 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00603 480 MobiDBLite consensus disorder prediction 140 156 - -
Gma12g00603 480 MobiDBLite consensus disorder prediction 439 480 - -
Gma12g00603 480 ProSiteProfiles Zinc finger RING-CH-type profile. 225 287 IPR011016 GO:0008270
Gma12g00603 480 MobiDBLite consensus disorder prediction 440 480 - -
Gma12g00603 480 CDD RING_CH-C4HC3_MARCH 233 281 - -
Gma12g00603 480 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 218 288 IPR013083 -
Gma12g00603 480 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 10 453 - -
Gma12g00603 480 PANTHER OS02G0165000 PROTEIN 10 453 - -
Gma12g00603 480 MobiDBLite consensus disorder prediction 48 82 - -
Gma12g00603 480 SUPERFAMILY RING/U-box 229 284 - -
Gma12g00603 480 SMART ringv_2 232 281 IPR011016 GO:0008270
Gma12g00603 480 MobiDBLite consensus disorder prediction 139 165 - -
Gma12g00603 480 MobiDBLite consensus disorder prediction 37 82 - -
Gma12g00603 480 Pfam RING-variant domain 233 280 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00603 Gma-Chr12 5056879 5061367 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00603 230 287 C3H Transcription Factor Family AT2G37950 49.153 3.38e-13 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00603 - - gmx:100788108 864.374
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00603 12 5056879 5061367 Gma12g00603 12 5056879 5061367 ECH
Gma12g00603 12 5056879 5061367 Gma11g01648 11 17830957 17836511 GST
Gma13g02909 13 43667025 43671547 Gma12g00603 12 5056879 5061367 PCT
Gma12g00603 12 5056879 5061367 Gma13g02909 13 43667025 43671547 PCT