Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00591 ATGGCTCCTAAAGTTGATAAGAAGAATGATCCAAAGGCCCAGGCCTTGAAGACTGCTAAGGCAGTTAAGTCAGGTGCTACCTTTAAGAAGAAGGTAAAGAAGATCCGAACTTCTGTCACTTTCCACAGGCCGAAGACCTTGAAGAAGGACAGGAACCCCAAGTACCCTCGCATTAGCGCCCCGCCGAGGAACAAGCTTGATCATTATCAGATCCTGAAATACCCCCTCACCACTGAGTCTGCCATGAAGAAGATTGAGGACAACAACACTTTGGTTTTCATTGTCGACCTGCGTGCCGACAAGAAGAAGATCAAGGATGCGGTGAAGAAAATGTATGACATCCAGGCCAAAAAAGTGAACACCTTGATCAGGCCTGATGGCACCAAGAAGGCATATGTCAGGTTGACACCTGATTACGATGCATTGGATGTGGCAAACAAGATTGGGATTATCTAG 456 0.4671 MAPKVDKKNDPKAQALKTAKAVKSGATFKKKVKKIRTSVTFHRPKTLKKDRNPKYPRISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDLRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00591 151 MobiDBLite consensus disorder prediction 39 62 - -
Gma12g00591 151 Gene3D - 32 151 IPR012677 -
Gma12g00591 151 PANTHER 60S RIBOSOMAL PROTEIN L23A-2 1 151 - -
Gma12g00591 151 MobiDBLite consensus disorder prediction 1 20 - -
Gma12g00591 151 Pfam Ribosomal protein L23, N-terminal domain 12 61 IPR005633 -
Gma12g00591 151 Pfam Ribosomal protein L23 71 133 IPR013025 GO:0003735|GO:0005840|GO:0006412
Gma12g00591 151 ProSitePatterns Ribosomal protein L23 signature. 129 144 IPR001014 -
Gma12g00591 151 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 68 144 IPR012678 GO:0003735|GO:0005840|GO:0006412
Gma12g00591 151 Hamap 50S ribosomal protein L23 [rplW]. 71 151 IPR013025 GO:0003735|GO:0005840|GO:0006412
Gma12g00591 151 PANTHER 60S RIBOSOMAL PROTEIN L23A 1 151 IPR013025 GO:0003735|GO:0005840|GO:0006412
Gma12g00591 151 TIGRFAM uL23_arch: ribosomal protein uL23 75 151 IPR019985 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00591 Gma-Chr12 4960733 4962459 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00591 24 151 Cytoplasmic Ribosomal Protein Gene Family AT2G39460 90.625 5.55e-68 201
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00591 K02893 - gmx:100500043 296.589
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00591 12 4960733 4962459 Gma12g00591 12 4960733 4962459 ECH
Gma11g01299 11 11097712 11100708 Gma12g00591 12 4960733 4962459 ECH
Gma12g00591 12 4960733 4962459 Gma11g01299 11 11097712 11100708 GST
Gma13g02967 13 44226925 44228272 Gma12g00591 12 4960733 4962459 PCT
Gma12g00591 12 4960733 4962459 Gma13g02967 13 44226925 44228272 PCT