Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00590 ATGAGTCCATCGCCGACGAACCTTCTGCAGCAGTTTCAAAGCCGTGGATTGAACTTTATTGTGGTGCAGTCTCTTCCCACGTTTCAGTTCAAGAAAAACGAGAGAGAACAAGACAAGACAATTAGTGTGGAGTGTGCCATCTGCCTCGGAGAGTTTGAAGAAGGGGAGTGGCTGAAACGTCTTCCACACTGCAGCCATAGTTTCCATGTTTCATGCATTGGTACGTGGTTTCAGTCGCATTCAAATTGTCCTCTTTGTAGATCTTTTGTGCATCATCACATCCTACAGTGTTCTATAGCTTCTCACACATTGCTACAGCCTTTGAGGAGGGAGGACTTTGAAAGGGTTCAGAGATAA 357 0.4538 MSPSPTNLLQQFQSRGLNFIVVQSLPTFQFKKNEREQDKTISVECAICLGEFEEGEWLKRLPHCSHSFHVSCIGTWFQSHSNCPLCRSFVHHHILQCSIASHTLLQPLRREDFERVQR 118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00590 118 SUPERFAMILY RING/U-box 21 93 - -
Gma12g00590 118 SMART ring_2 45 86 IPR001841 -
Gma12g00590 118 CDD RING-H2_EL5_like 44 87 - -
Gma12g00590 118 ProSiteProfiles Zinc finger RING-type profile. 45 87 IPR001841 -
Gma12g00590 118 PANTHER RING-H2 FINGER PROTEIN ATL16 9 104 IPR044600 GO:0016567|GO:0016740
Gma12g00590 118 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 6 92 IPR013083 -
Gma12g00590 118 Pfam Ring finger domain 44 87 IPR001841 -
Gma12g00590 118 PANTHER RING-H2 FINGER PROTEIN ATL16 9 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00590 Gma-Chr12 4959319 4959675 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00590 14 91 Rapid Response to Elicitors AT3G16720 55.128 1.08e-23 90.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00590 - - gmx:121172630 210.305