Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00588 ATGCCGATTTCTAGAATTGCCATCGGAAATCCTTCAGAATTTGGCCAAGCTGATGCACTGAAGGCTGCTCTTGCTGAGTTCATCTCAATGCTAATATTTGTCTTCGCAGGAGAAGGCTCAGGCATGGCATATAATAAACTCACAGACAATGGTTCAGCAACACCAGCTGGGGTGGTGGCAGCATCACTGTCTCATGCATTTACTCTTTTTGTTGCGGTTTCAGTTGGTGCTAACATCTCAGGTGGACATGTTAACCCTGCTGTCACATTTGGTGCCTTTATTGGTGGCCACATATCCCTCCTCAGAGGCATTTTGTTCTGGATTGCTCAGTTGCTTGGCTCTGTAGTGGCTTGCTTGCTCCTTAAATTTGCCACTGTTGGATTGGAAACATCTGCGTTCTCATTGTCTCCTGGGGTGGGAGCTGCAAATGCACTTGTTTTTGAGATTGTGATGACTTTTGGTTTGGTTTACACAGTGTATGCCACTGCAGTGGACCCAAAGAAGGGTAAACTTGGGATAATTGCTCCAATTGCAATTGGTTTCATTGTGGGTGCTAACATCTTGGCAGGTGGTACCTTTAGTGGTGCATCCATGAACCCAGCAGTTTCTTTTGGACCTGCTGTTGTTAGCGGGACATGGGCTAACCACTGGGTCTACTGGGCCGGCCCATTAATTGGCTCGGCTATTGCTGCTGTTGTGTACGAGACTTTCTTCATCACCCCTAACTCTTATGAACAGCTACCCGTCACAGATTATTAG 759 0.4677 MPISRIAIGNPSEFGQADALKAALAEFISMLIFVFAGEGSGMAYNKLTDNGSATPAGVVAASLSHAFTLFVAVSVGANISGGHVNPAVTFGAFIGGHISLLRGILFWIAQLLGSVVACLLLKFATVGLETSAFSLSPGVGAANALVFEIVMTFGLVYTVYATAVDPKKGKLGIIAPIAIGFIVGANILAGGTFSGASMNPAVSFGPAVVSGTWANHWVYWAGPLIGSAIAAVVYETFFITPNSYEQLPVTDY 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00588 252 Pfam Major intrinsic protein 16 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gma12g00588 252 ProSitePatterns MIP family signature. 83 91 IPR022357 -
Gma12g00588 252 PANTHER MAJOR INTRINSIC PROTEIN-RELATED 1 252 - -
Gma12g00588 252 CDD MIP 21 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gma12g00588 252 PANTHER AQUAPORIN-8 1 252 IPR034294 -
Gma12g00588 252 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gma12g00588 252 PRINTS Major intrinsic protein family signature 102 121 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gma12g00588 252 PRINTS Major intrinsic protein family signature 65 89 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gma12g00588 252 PRINTS Major intrinsic protein family signature 217 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gma12g00588 252 PRINTS Major intrinsic protein family signature 147 165 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gma12g00588 252 PRINTS Major intrinsic protein family signature 180 202 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gma12g00588 252 SUPERFAMILY Aquaporin-like 18 243 IPR023271 -
Gma12g00588 252 Gene3D Glycerol uptake facilitator protein. 4 252 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00588 Gma-Chr12 4940206 4941378 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00588 1 252 Major Intrinsic Protein MIP AT2G36830 78.175 4.11e-137 384
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00588 K09873 - gmx:100777419 480.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00588 12 4940206 4941378 Gma12g00588 12 4940206 4941378 ECH
Gma11g01296 11 11070672 11072438 Gma12g00588 12 4940206 4941378 ECH
Gma12g00588 12 4940206 4941378 Gma11g01296 11 11070672 11072438 GST
Gma13g02970 13 44250158 44251721 Gma12g00588 12 4940206 4941378 PCT
Gma12g00588 12 4940206 4941378 Gma13g02970 13 44250158 44251721 PCT