Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00587 ATGGGACTTTATAGCAAAGGTTTGAATAGAACAGGTAAGAGTTGCAGATTACGGTGGGTTAATTACCTCCACCCCGATCTCAAACGAGGGAAGCTCACACCCCAAGAACAACACCTCGTCATGGACCTTCATTCCAAATGGGGAAATAGATGGTCAAGAATTGCTCGCAAGCTACCAGGGCGCACTGACAATGAGATTAAGAATTATTGGAGGACTCACATGAGAAAGAAAAAGGCTCTGGAGAAAAAGCATGCATCAGCATCAGCATCATCACCTGTTTCTTCTAGTTGTCAATCTTCACTATCTTCAAACAACCATGTTGTGGATTCACATGCTTCCAAAGAGAGTTTTTATGACACAGGTGGATATGATGACATGATGATGGGGTTAATTGGTGGTGAAAAGGGGTACTCTATGGATGATATATGGAAAGATATTGTTTTGTCAGGAGAAGAGAACAGCATTTATAACAACAATAATCTGCAACCTGTGTATGAAGAAGGGCATAGTGAAGAGGGATTCAACTTCTCTTGTCCTCCACCAATGATGATTATGCCTTCTCCACCATCATGGGATCAGTACAACATTTCTTCTCAACCCCTCTGGGTGATGGATGAAGAAGAAAGTAACAAGATGTTATTCCCTACACTAAGTGACCAATATTTTTCTCACTATGAACAAGGGAACGAATTTCTGACCGGCTAA 705 0.4142 MGLYSKGLNRTGKSCRLRWVNYLHPDLKRGKLTPQEQHLVMDLHSKWGNRWSRIARKLPGRTDNEIKNYWRTHMRKKKALEKKHASASASSPVSSSCQSSLSSNNHVVDSHASKESFYDTGGYDDMMMGLIGGEKGYSMDDIWKDIVLSGEENSIYNNNNLQPVYEEGHSEEGFNFSCPPPMMIMPSPPSWDQYNISSQPLWVMDEEESNKMLFPTLSDQYFSHYEQGNEFLTG 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00587 234 CDD SANT 33 74 IPR001005 -
Gma12g00587 234 MobiDBLite consensus disorder prediction 87 107 - -
Gma12g00587 234 Gene3D - 32 75 - -
Gma12g00587 234 PANTHER TRANSCRIPTION FACTOR MYB48-RELATED 7 214 - -
Gma12g00587 234 Pfam Myb-like DNA-binding domain 29 73 IPR001005 -
Gma12g00587 234 MobiDBLite consensus disorder prediction 80 107 - -
Gma12g00587 234 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 24 78 IPR017930 -
Gma12g00587 234 ProSiteProfiles Myb-like domain profile. 24 74 IPR001005 -
Gma12g00587 234 SUPERFAMILY Homeodomain-like 9 80 IPR009057 -
Gma12g00587 234 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 7 214 IPR044676 GO:0003700|GO:0006355|GO:0043565
Gma12g00587 234 Gene3D - 4 28 - -
Gma12g00587 234 SMART sant 28 76 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00587 Gma-Chr12 4932010 4933557 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00587 7 229 MYB Transcription Factor Family AT5G59780 48.214 1.29e-52 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Gma12g00587 Myb_DNA-binding 1.4e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00587 K09422 - gmx:100776886 374.015
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00587 12 4932010 4933557 Gma12g00587 12 4932010 4933557 ECH
Gma12g00587 12 4932010 4933557 Gma11g01294 11 11062348 11063913 GST
Gma12g00587 12 4932010 4933557 Gma13g02971 13 44252961 44254617 PCT
Gma12g00587 12 4932010 4933557 Gma15g00396 15 3293714 3295329 PCT