Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00585 ATGAAGAGAGGCAGAGATAAGGAGAGTGAGGTGGGCATGGCTAATTATTTGATGTTACTGACCAAAGTTGGTGAAACTGAAACCCCATCAAGAGAGAGGGTTCTAAGTTGTGGTGATTTTAGGTGCAAGACATGTAACAGGAAATTCCATTCGTTTCAAGCACTTGGGGGCCACCGAGCCAGCCACAAGAAGCTAAAACTCATGGCTTCAAACCTTTCGTGTTCGATGGCACAAAAAAAGCACCAGTGCCCCATTTGTGGGCTTGAGTTTGGGATTGGACAAGCCCTCGGAGGGCACATGAGAAAACATAGATCAGCTTCCTTAAATGAAGGTCGTCCGGTTAGGGTTCCGGCCATCGCTAAGGGCACGGATCGTAAAATCTTCTCGAAGCTTCTATGCTATTACTCAGAGTTATTAGGCACCATTTTTACCACTTGA 438 0.4612 MKRGRDKESEVGMANYLMLLTKVGETETPSRERVLSCGDFRCKTCNRKFHSFQALGGHRASHKKLKLMASNLSCSMAQKKHQCPICGLEFGIGQALGGHMRKHRSASLNEGRPVRVPAIAKGTDRKIFSKLLCYYSELLGTIFTT 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00585 145 ProSitePatterns Zinc finger C2H2 type domain signature. 42 62 IPR013087 -
Gma12g00585 145 ProSiteProfiles Zinc finger C2H2 type domain profile. 81 108 IPR013087 -
Gma12g00585 145 SUPERFAMILY beta-beta-alpha zinc fingers 40 103 IPR036236 -
Gma12g00585 145 Pfam C2H2-type zinc finger 40 64 - -
Gma12g00585 145 Pfam C2H2-type zinc finger 81 105 - -
Gma12g00585 145 ProSiteProfiles Zinc finger C2H2 type domain profile. 40 67 IPR013087 -
Gma12g00585 145 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 1 113 - -
Gma12g00585 145 Gene3D Classic Zinc Finger 18 110 - -
Gma12g00585 145 PANTHER ZINC FINGER PROTEIN ZAT5 1 113 - -
Gma12g00585 145 ProSitePatterns Zinc finger C2H2 type domain signature. 83 103 IPR013087 -
Gma12g00585 145 SMART c2h2final6 40 62 IPR013087 -
Gma12g00585 145 SMART c2h2final6 81 103 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00585 Gma-Chr12 4901966 4904193 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00585 1 126 C2H2 Transcription Factor Family AT2G28710 49.231 1.96e-29 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gma12g00585 zf-C2H2_6 1.7e-08 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00585 - - gmx:100819852 224.557
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00585 12 4901966 4904193 Gma11g01291 11 11012266 11013053 GST
Gma13g02974 13 44292275 44292917 Gma12g00585 12 4901966 4904193 PCT
Gma15g00392 15 3259423 3260141 Gma12g00585 12 4901966 4904193 PCT
Gma12g00585 12 4901966 4904193 Gma13g02974 13 44292275 44292917 PCT
Gma12g00585 12 4901966 4904193 Gma15g00392 15 3259423 3260141 PCT