Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00584 ATGTCTTTGCAAAACAAGGGATTTTGGATGGTAAAGGGTTCTGGACAAATTAATGACAGAGAGACAATATTTGATAATCCTACCAAAATTGAACCAAAACGACCTCATCAATGGTTTGTTGACGCTGCTGAAGTAGATTTTTTTCCAAACAAGAAACAAGCTGTAGAAGATGCAGATGAAAAATCTAGTCCTGGATTTTCAAATGTAAATATTCCTCCCTGGGAGAACAATCCCAATTTTCATTCGGTCCCAAACCAATTTATTGGCCGATTATTTGGGTCTGAAACTAGGCCTGTCAATTTCACTGAGAAGAATACTTCATATGTTTTGGCTGATGATTCTAATGTGAGATCAAAGATGATCACCAATCAATATGGAGATGATGCATCTTTTGGTTTGTCTATATCTCATTCTATTGAAGATTCTGAAGCATGTGTAAATTTTGGTGGAATAAAAAAAGTCAAAGTAAATCAGGTAAAGGAAGATGATATACAGGCTCTGGAGGGACATAATTTTGGTAGGCCAAATAATGGTAATCTACATCAGGCCTATAACAGGGAAGTTGAGACAAGGTCTGCATCAATAGGGCAAGCCTTTGACAGGGATGGTGATGCTTCTTTAATGGGACTTACCTACAGCAAAGGGGATGCACATGTCAGATCATTTAGTGCCCCCTTTGTCAAAGGTGATGACTCAATTGTATCAATTAGTGAGTCCTATAATAAAGAGGACACAAATATAATTTCTTTTGGTGGGTTCCCAGATGAAAGGGATATTATCTCTGTGGGTAGGCCTGCTGCAGAGTATGATCAATTATATAATCAATCTTCAGTTCATGGGTCAACAACAGCCCACGAGAAAGAGTTGGATGTGTCAAGTTCTGATGCAGTTGCAAGTACACTTCAGGTAGCAAAAGTTAAGTCTGAAACTGTATCCAAGAATAAACAAGAGCTCAAAACAGCAAAGAATGAAGCTCCAAACAGCTTCCCTTCTAATGTCAGAAGCTTGATATCTACTGGTATTCTTGATGGAGTTCCTGTAAAGTATATCTCAGTGTCACGAGAGGAACTTCGTGGAATTATAAAAGGCTCTGGCTATCTTTGTGGGTGCCAATCATGCAACTATACAAAGGTTCTGAATGCTTACGAGTTTGAGAGACATGCTGGCTGCAAAACAAAACATCCAAACAATCATATTTATTTTGAGAATGGGAAGACTATTTATCAAATAGTACAGGAATTGAGGAGTACCCCCGAAAGTTTGTTGTTTGATACAATTCAAACAGTTTTTGGTGCACCAATTCATCAAAAAGCATTTCGCAACTGGAAAGAATCATTTCAAGCAGCAACACGGGAGCTTCAACGCATTTATGGAAAGGAAGAACTTAACCTATAA 1395 0.3814 MSLQNKGFWMVKGSGQINDRETIFDNPTKIEPKRPHQWFVDAAEVDFFPNKKQAVEDADEKSSPGFSNVNIPPWENNPNFHSVPNQFIGRLFGSETRPVNFTEKNTSYVLADDSNVRSKMITNQYGDDASFGLSISHSIEDSEACVNFGGIKKVKVNQVKEDDIQALEGHNFGRPNNGNLHQAYNREVETRSASIGQAFDRDGDASLMGLTYSKGDAHVRSFSAPFVKGDDSIVSISESYNKEDTNIISFGGFPDERDIISVGRPAAEYDQLYNQSSVHGSTTAHEKELDVSSSDAVASTLQVAKVKSETVSKNKQELKTAKNEAPNSFPSNVRSLISTGILDGVPVKYISVSREELRGIIKGSGYLCGCQSCNYTKVLNAYEFERHAGCKTKHPNNHIYFENGKTIYQIVQELRSTPESLLFDTIQTVFGAPIHQKAFRNWKESFQAATRELQRIYGKEELNL 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00584 464 Pfam Tify domain binding domain 359 414 IPR032308 -
Gma12g00584 464 PANTHER AUTOIMMUNE REGULATOR 1 464 - -
Gma12g00584 464 PANTHER DNA-BINDING PROTEIN 1 464 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00584 Gma-Chr12 4898946 4901899 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00584 311 447 PHD Transcription Factor Family AT3G53680 52.174 8.81e-41 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00584 - - gmx:100819317 940.643
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00584 12 4898946 4901899 Gma12g00584 12 4898946 4901899 ECH
Gma11g01290 11 11007512 11011048 Gma12g00584 12 4898946 4901899 ECH