Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00578 ATGTCTGCAGCCATGGATATGTCGCTCGACGACATAATCAAGAACAACAAAAAGTCTGGATCCGGAAGTTCACGTGGCCGGACCCGACCCTCCGGATCCGGACCTACTCGCCGGCTCCCCAACCGTGCCGCCAACCGCGCCGCACCTTATGCCCCCGCTAAGGCGCCGGAGGCAACGTGGCAGCACGATTTATATGCAGATCAGCATGTGGCTGCGGCGGGGTACCCTGCTCAAGGTGGTCGTGCGGCTTCCATAGAAACTGGGACCAAGCTTTACATTTCAAACTTGGATTATGGTGTTTCCAATGATGATATTAAGGAATTGTTTGCTGAAGTGGGTGACTTGAAACGGCATGCGGTTCATTATGACAGGAGTGGCAGATCAAAGGGTACAGCAGAAGTAGTATTTTCACGACGAGCTGATGCTGTATCTGCTGTAAAGAGATACAACAACGTTCAATTAGATGGGAAACCAATGAAGATTGAAATTGTGGGAACAAACATTTCCACACCTGGTGTAGCTCCTGCTCCTAACGGAGCTATTGGAAATTTTAATGGAGTTCCTCGAAGTGGACAAGGAAGAGGTGGGGCATTAAGAAGGCCAGGAGGAAGAGGGCAAGGCATTCGAAGGGATCGGGGACGGGGAAGAGGTCGTGGTGGAGGAGGCCGTGGTGAAAAGGTATCTGCTGATGATCTTGATGCTGATTTGGAGAAGTATCATGCAGAGGCAATGCAATTGAACTGA 744 0.5067 MSAAMDMSLDDIIKNNKKSGSGSSRGRTRPSGSGPTRRLPNRAANRAAPYAPAKAPEATWQHDLYADQHVAAAGYPAQGGRAASIETGTKLYISNLDYGVSNDDIKELFAEVGDLKRHAVHYDRSGRSKGTAEVVFSRRADAVSAVKRYNNVQLDGKPMKIEIVGTNISTPGVAPAPNGAIGNFNGVPRSGQGRGGALRRPGGRGQGIRRDRGRGRGRGGGGRGEKVSADDLDADLEKYHAEAMQLN 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00578 247 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 1 246 - -
Gma12g00578 247 CDD RRM_THOC4 89 163 - -
Gma12g00578 247 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 91 159 IPR000504 GO:0003723
Gma12g00578 247 Gene3D - 72 229 IPR012677 -
Gma12g00578 247 SMART rrm1_1 90 162 IPR000504 GO:0003723
Gma12g00578 247 MobiDBLite consensus disorder prediction 14 35 - -
Gma12g00578 247 SUPERFAMILY RNA-binding domain, RBD 82 195 IPR035979 GO:0003676
Gma12g00578 247 MobiDBLite consensus disorder prediction 204 233 - -
Gma12g00578 247 Pfam C-terminal duplication domain of Friend of PRMT1 190 241 IPR025715 -
Gma12g00578 247 PANTHER CHROMATIN TARGET OF PRMT1 PROTEIN-RELATED 1 246 - -
Gma12g00578 247 MobiDBLite consensus disorder prediction 1 53 - -
Gma12g00578 247 MobiDBLite consensus disorder prediction 186 233 - -
Gma12g00578 247 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 89 166 IPR000504 GO:0003723
Gma12g00578 247 SMART FoP_duplication_2 174 247 IPR025715 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00578 Gma-Chr12 4853025 4858951 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00578 88 163 Eukaryotic Initiation Factors Gene Family AT2G23350 36.842 1.02e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00578 K12881 - gmx:100775827 375.555
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00578 12 4853025 4858951 Gma12g00578 12 4853025 4858951 ECH
Gma11g01284 11 10949216 10954358 Gma12g00578 12 4853025 4858951 ECH
Gma12g00578 12 4853025 4858951 Gma11g01284 11 10949216 10954358 GST
Gma13g02982 13 44334789 44339084 Gma12g00578 12 4853025 4858951 PCT
Gma12g00578 12 4853025 4858951 Gma13g02982 13 44334789 44339084 PCT