Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00569 atggctggaaaaggcgagggtcctgctatcggaatcgatttgggaacgacgtactcttgcgtcggcgtgtggcaacacgatcgtgttgaaatcatagccaacgaccagggtaacagaactaccccatcctacgtggctttcaccgacacagaacggttgatcggcgatgcggcgaagaaccaggtcgctatgaacccaatcaacactgtttttgatgctaagcgtttgattggaagacgtttttctgatgcatcggtacaaagtgacatgaaactgtggccgtttaaggttattcctggccctgctgacaagcctatgattgtggtgaattacaagggggatgagaagcagttttcggcggaagagatatcttccatggttcttataaagatgaaggagatcgcggaggcgtatctaggatcgacgataaagaatgcagttgtcaccgtccctgcttacttcaacgactcacagcgtcaagctacaaaggacgctggtgtcatttccgggctcaacgtgatgcgaattatcaacgagcctacagcggccgccattgcttatggactcgacaagaaggccactagctctggggagaagaatgttctcatcttcgacctcggtggtgggacttttgatgtctcccttctcaccattgaggagggtattttcgaagtgaaagccactgctggtgatactcacttgggaggtgaagattttgataacagaatggtgaaccattttgttcaggaattcaagaggaagaacaagaaggatattagtggaaatgccagagcattgaGGAGGTTGAGAACAGCATGTGAGAGGGCCAAGAGAACTCTCTCTTCCACTGCTCAAACCACCATTGAGATTGATTCCTTGTATGAGGGTATTGACTTCTACACAACCATCACCCGTGCCCGTTTCGAAGAGCTTAACATGGACCTATTCAGGAAGTGCATGGAGCCCGTGGAGAAGTGTTTGCGGGATGCTAAGATGGACAAGAGCACCGTCCATGATGTTGTTCTTGTCGGTGGTTCTACTAGGATTCCCAAGGTTCAACAGTTGTTGCAGGACTTCTTCAACGGAAAGGAGCTTTGCAAGAGCATTAACCCAGATGAAGCTGTTGCCTATGGTGCAGCAGTGCAGGCTGCCATTCTCAGTGGCGAGGGTAATGAGAAAGTGCAGGATCTTCTGTTGTTGGATGTTACTCCTCTCTCCCTTGGGTTGGAGACCGCAGGAGGAGTCATGACTGTGTTGATTCCCAGAAACACAACCATTCCCACCAAGAAGGAGCAGGTATTTTCGACCTATTCCGACAACCAGCCTGGTGTGTTGAttcaggtctatgaaggtgaacgtacgaggactcgtgataacaatttgcttggcaaatttgagtTATCTGGAATTCCTCCTGCTCCGAGAGGTGTTCCTCAGATCACCGTTTGCTTTGACATTGACGCCAACGGTATATTGAACGTGTCTGCGGAGGACAAAACCACTGGACAGAAGAACAAGATTACAATTACCAACGACAAAGGAAGGCTTTCTAAGGAGGAGATTGAGAAGATGGTGCAGGAAGCTGAGAAGTACAAGGCTGAGGATGAGGAGCATAAGAAGAAAGTGGAGGCCAAAAATACATTGGAGAATTACGCCTATAACATGAGGAACACAATTAAAGATGATAAGATTGCTTCCAAGCTGTCTGCTGATGATAAGAAGAAAATTGAGGATGCAATTGAGCAGGCTATCCAATGGCTCGATGGAAACCAACTTGCTGAAGCTGACGAATTCGAGGACAAGATGAAGGAGTTGGAGAGCATTTGTAACCCCATCATAGCAAAGATGTACCAAGGAGCTGGTGGTGATGCGGGTGGAGCCATGGATGAGGATGGTCCTGCTGCTGGCAGTGGAAGCGGTGCTGGACCCAAAATTGAGGAAGTCGATTAA 1950 0.2667 MAGKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPINTVFDAKRLIGRRFSDASVQSDMKLWPFKVIPGPADKPMIVVNYKGDEKQFSAEEISSMVLIKMKEIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVISGLNVMRIINEPTAAAIAYGLDKKATSSGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNARALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYTTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKEEIEKMVQEAEKYKAEDEEHKKKVEAKNTLENYAYNMRNTIKDDKIASKLSADDKKKIEDAIEQAIQWLDGNQLAEADEFEDKMKELESICNPIIAKMYQGAGGDAGGAMDEDGPAAGSGSGAGPKIEEVD 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00569 649 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 543 624 IPR029048 -
Gma12g00569 649 ProSitePatterns Heat shock hsp70 proteins family signature 3. 340 354 IPR018181 -
Gma12g00569 649 PANTHER HEAT SHOCK COGNATE 70 KDA PROTEIN 2-LIKE 1 629 - -
Gma12g00569 649 Gene3D - 10 384 - -
Gma12g00569 649 ProSitePatterns Heat shock hsp70 proteins family signature 2. 203 216 IPR018181 -
Gma12g00569 649 PANTHER HEAT SHOCK PROTEIN 70KDA 1 629 IPR013126 GO:0005524|GO:0140662
Gma12g00569 649 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 391 544 IPR029047 -
Gma12g00569 649 MobiDBLite consensus disorder prediction 619 649 - -
Gma12g00569 649 PRINTS 70kDa heat shock protein signature 8 21 - -
Gma12g00569 649 PRINTS 70kDa heat shock protein signature 36 48 - -
Gma12g00569 649 PRINTS 70kDa heat shock protein signature 58 66 - -
Gma12g00569 649 PRINTS 70kDa heat shock protein signature 146 166 - -
Gma12g00569 649 PRINTS 70kDa heat shock protein signature 209 219 - -
Gma12g00569 649 PRINTS 70kDa heat shock protein signature 337 353 - -
Gma12g00569 649 PRINTS 70kDa heat shock protein signature 369 389 - -
Gma12g00569 649 PRINTS 70kDa heat shock protein signature 396 415 - -
Gma12g00569 649 PRINTS 70kDa heat shock protein signature 477 493 - -
Gma12g00569 649 SUPERFAMILY Actin-like ATPase domain 8 191 IPR043129 -
Gma12g00569 649 ProSitePatterns Heat shock hsp70 proteins family signature 1. 12 19 IPR018181 -
Gma12g00569 649 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 392 549 IPR029047 -
Gma12g00569 649 Gene3D - 192 366 - -
Gma12g00569 649 SUPERFAMILY Actin-like ATPase domain 197 388 IPR043129 -
Gma12g00569 649 Pfam Hsp70 protein 9 618 IPR013126 GO:0005524|GO:0140662
Gma12g00569 649 CDD HSPA1-2_6-8-like_NBD 9 387 - -
Gma12g00569 649 Coils Coil 518 545 - -
Gma12g00569 649 Gene3D - 545 619 IPR029048 -
Gma12g00569 649 Gene3D - 71 126 - -
Gma12g00569 649 Gene3D Actin; Chain A, domain 4 235 318 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00569 Gma-Chr12 4778943 4781861 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00569 1 649 Calmodulin-binding Proteins AT3G12580 92.780 0.0 1229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00569 K03283 - gmx:100816111 1236.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00569 12 4778943 4781861 Gma12g00569 12 4778943 4781861 ECH
Gma12g00569 12 4778943 4781861 Gma19g01629 19 45711360 45714358 ECH
Gma03g01577 03 42049249 42052324 Gma12g00569 12 4778943 4781861 ECH
Gma19g01629 19 45711360 45714358 Gma12g00569 12 4778943 4781861 ECH