Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00566 ATGGAGGGCGAGAACGCGAGCAACAAGGTGATCGAGTTGATGAACGAGATAGCCAGCATCTCCGATTACAGGCCTCCGGTGAAGAAGCAGTACTGCAACTTGGCGCGGAGGCTGAAGCTTCTGATCCCGATGTTCGAGGAGATTAGGGACATGAACAAAGACGCGCTTCCCGATAACACTTCCAACGCCGTCCTCGCCTTCAAGGAAGCTCTCGAATCCGCTATGGAACTCCTCAGATTCGGAAGCGAGGGCAGCAAGCTTTACTTGGTCCTTGAGCGGGACGAAATTATGAATAAATTCTACAAGGTGACAGCTCAGTTGGAACAGTCGTTGGGTGGTATTTCCTATGATAAACTTGATATATCAGATGAAGTTAAAGAGCAGGTTGAGTTGGTTCTTGCCCAGTTCAGAAGAGCTAAAGGGAGGGTTGATGAACCAGATGTCAGGTTGTATGAGGATATGTTGTCTGTTTACAACAACAGCAGTGATGCAGCTACAGATCCATCTGTTCTAAGTCAATTAGCTGAAAAGTTGAAATTGATGGGAATAGCTGATCTTACTCAAGAATCACTTGCTTTGCATGAGATGGTGGCATCAAGTGGTGGGGATCCAGGGGCACGCATTGAGAAAATGTCAATGTTATTGAAGAAGATAAAGGATTTCGTGCAAATAGAAAATCTAGTCAAGGATGATAATTTAGGAGGAAAAGGCATTTTCTCAAAAGTCTATGGACTTGGGACAAATGAAAAGAGTCATCAAGCTCCTGTTATCCCTGATGATTTTCGATGTCCGATTTCCCTGGAATTAATGAAGGACCCTGTCATTGTTTCAACGGGACAGACTTATGAGCGTACTTGTATTGAGAAGTGGTTGCAAGCAGGGCATGgaacctgccccaaaacacagcagactctcactagtactgttctcacgcctaactatgtattgcgaagcctcatagcacaatggtgtgaagccaatggcatagagccaccaaaACGACCTAGTGGTTCACAACCTAGTAAATCAGCATCAGCCTACTCACCCGCTGAGCAAAGTAAGATTGGAAGTCTTCTCCAAAAGCTCATATCTGTCAGTCCTGAAGACCAGAGATCAGCTGCAGGTGAGATCCGCCTTCTTGCAAAGCGCAATGCTGATAACCGCGTTGCCATTGCTGAAGCTGGTGCAATACCTCTCCTTGTCAGTCTCTTGTCTGTGCCTGACTCCCGCACTCAAGAACATGCTGTGACAGCGCTCCTGAATCTTTCCATATACGAAAATAACAAAGGAAGTATTGTTTCTTCAGGAGCAGTTCCAGGTATAGTTCATGTGCTGAAGAAGGGAAGCATGGAAGCTCGGGAAAATGCAGCTGCAACACTTTTCAGCCTTTCAGTTATAGATGAAAACAAGGTTACAATTGGGTCTTTAGGAGCCATACCACCACTGGTGACACTGCTAAgtgagggtagccaaaggggtaagaaagatgctgcaacagcactcttcaatttgtgcatttaccagggcaacaagggaaaggcagtgagggctggcgttattcccacactgatgcgactactgaccgaacctagcgggggaatggtggatgaagcattagctattttggcaatattggccagccatcctgaagggaaggttactattagagcttcagaggcagtgccagtgttagtagagtttattgggaatggctccccaaggaacaaagagaatgctgctgctgttttagttcacctctgttctggagatcaacaatatctagcacaggcccaagagctgggggtgatgggtccactgttggaattggctcaaaatggaacagacagaggcaaaagaaaggctggaCAATTGCTAGAGCGTATGAGCAGGCTAGTTGAGCAACAGCAGGAAGTTCCAACACAAACTGAAACTCAAGCTCAGAACGAGGATACCGAACCACCTTTGATTACTAACCCCGATGATTCCTAA 1989 0.3363 MEGENASNKVIELMNEIASISDYRPPVKKQYCNLARRLKLLIPMFEEIRDMNKDALPDNTSNAVLAFKEALESAMELLRFGSEGSKLYLVLERDEIMNKFYKVTAQLEQSLGGISYDKLDISDEVKEQVELVLAQFRRAKGRVDEPDVRLYEDMLSVYNNSSDAATDPSVLSQLAEKLKLMGIADLTQESLALHEMVASSGGDPGARIEKMSMLLKKIKDFVQIENLVKDDNLGGKGIFSKVYGLGTNEKSHQAPVIPDDFRCPISLELMKDPVIVSTGQTYERTCIEKWLQAGHGTCPKTQQTLTSTVLTPNYVLRSLIAQWCEANGIEPPKRPSGSQPSKSASAYSPAEQSKIGSLLQKLISVSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVSLLSVPDSRTQEHAVTALLNLSIYENNKGSIVSSGAVPGIVHVLKKGSMEARENAAATLFSLSVIDENKVTIGSLGAIPPLVTLLSEGSQRGKKDAATALFNLCIYQGNKGKAVRAGVIPTLMRLLTEPSGGMVDEALAILAILASHPEGKVTIRASEAVPVLVEFIGNGSPRNKENAAAVLVHLCSGDQQYLAQAQELGVMGPLLELAQNGTDRGKRKAGQLLERMSRLVEQQQEVPTQTETQAQNEDTEPPLITNPDDS 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00566 662 SMART arm_5 548 588 IPR000225 GO:0005515
Gma12g00566 662 SMART arm_5 384 424 IPR000225 GO:0005515
Gma12g00566 662 SMART arm_5 590 630 IPR000225 GO:0005515
Gma12g00566 662 SMART arm_5 425 465 IPR000225 GO:0005515
Gma12g00566 662 SMART arm_5 466 506 IPR000225 GO:0005515
Gma12g00566 662 SMART arm_5 507 547 IPR000225 GO:0005515
Gma12g00566 662 MobiDBLite consensus disorder prediction 631 662 - -
Gma12g00566 662 Pfam Neurochondrin 518 603 IPR008709 -
Gma12g00566 662 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 257 330 IPR013083 -
Gma12g00566 662 Gene3D - 340 649 IPR011989 -
Gma12g00566 662 ProSiteProfiles U-box domain profile. 256 330 IPR003613 GO:0004842|GO:0016567
Gma12g00566 662 SMART Ubox_2 260 323 IPR003613 GO:0004842|GO:0016567
Gma12g00566 662 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 477 519 IPR000225 GO:0005515
Gma12g00566 662 PANTHER U BOX DOMAIN-CONTAINING 5 645 - -
Gma12g00566 662 SUPERFAMILY RING/U-box 248 333 - -
Gma12g00566 662 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 5 645 - -
Gma12g00566 662 Pfam Armadillo/beta-catenin-like repeat 467 505 IPR000225 GO:0005515
Gma12g00566 662 Pfam Armadillo/beta-catenin-like repeat 384 423 IPR000225 GO:0005515
Gma12g00566 662 Gene3D - 7 116 IPR036537 GO:0007166
Gma12g00566 662 Pfam U-box domain 257 327 IPR003613 GO:0004842|GO:0016567
Gma12g00566 662 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 518 560 IPR000225 GO:0005515
Gma12g00566 662 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 395 437 IPR000225 GO:0005515
Gma12g00566 662 CDD RING-Ubox_PUB 261 303 IPR045210 -
Gma12g00566 662 SUPERFAMILY ARM repeat 355 631 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00566 Gma-Chr12 4745531 4750336 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00566 1 662 U-box Gene Family AT3G46510 69.265 0.0 902
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00566 - - gmx:100815575 1263.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00566 12 4745531 4750336 Gma12g00566 12 4745531 4750336 ECH
Gma12g00566 12 4745531 4750336 Gma11g01269 11 10824549 10829214 GST