Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00564 ATGGCAGATGGTGAGGATATTCAACCACTCGTCTGCGATAATGGGACAGGAATGGTGAAAGCTGGATTTGCTGGGGATGATGCTCCGAGGGCTGTGTTTCCCAGCATTGTTGGTCGTCCCCGTCACACGGGAGTGATGGTTGGCATGGGCCAAAAAGATGCATATGTTGGGGATGAAGCTCAGTCCAAGAGAGGTATATTAACTCTCAAATATCCCATTGAGCATGGTATTGTGAGTAACTGGGATGACATGGAGAAGATCTGGCATCACACCTTCTACAATGAACTCCGTGTCGCTCCTGAGGAGCACCCAGTTCTGCTAACCGAAGCACCTCTCAACCCAAAGGCTAATCGTGAGAAAATGACCCAAATTATGTTTGAGACCTTCAATACCCCTGCAATGTATGTTGCCATCCAGGCTGTTCTATCCTTGTATGCCAGTGGCCGCACAACTGGTATCGTTCTAGACTCTGGAGATGGTGTCAGCCATACTGTCCCCATTTACGAGGGGTATGCTCTCCCTCATGCCATCCTCCGTCTTGACTTAGCAGGACGTGATCTCACTGATGCCTTGATGAAAATCCTTACAGAACGTGGTTATTCCTTCACTACCACAGCTGAGCGTGAAATTGTAAGGGATGTAAAGGAAAAGCTGGCTTATATTGCCCTTGATTACGAGCAAGAGCTTGAAACATCAAAAACTAGCTCTGCTGTTGAGAAGAGCTATGAGTTGCCGGATGGACAGGTCATCACCATTGGTGCTGAGCGTTTCAGATGTCCTGAAGTTCTCTTCCAACCATCCATGATCGGAATGGAAGCTTCTGGCATTCATGAGACCACTTACAATTCAATCATGAAGTGTGATGTCGACATTAGGAAGGACTTGTATGGAAACATTGTTCTCAGTGGTGGATCTACCATGTTCCCAGGTATCGCTGACAGAATGAGCAAGGAAATCTCAGCTTTGGCCCCAAGCAGCATGAAGATTAAGGTGGTTGCTCCACCTGAGAGAAAGTACAGTGTCTGGATTGGTGGCTCTATCTTGGCTTCTCTCAGCACTTTCCAACAGATGTGGATTGCAAAGGCTGAGTATGATGAGGCTGGTCCTTCAATTGTACACAGGAAATGCTTCTGA 1134 0.4727 MADGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDVKEKLAYIALDYEQELETSKTSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEASGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDEAGPSIVHRKCF 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00564 377 ProSitePatterns Actins signature 2. 358 366 IPR004001 -
Gma12g00564 377 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
Gma12g00564 377 PANTHER ACTIN 1 376 IPR004000 -
Gma12g00564 377 PANTHER ACTIN-97 1 376 - -
Gma12g00564 377 SUPERFAMILY Actin-like ATPase domain 149 377 IPR043129 -
Gma12g00564 377 SUPERFAMILY Actin-like ATPase domain 6 155 IPR043129 -
Gma12g00564 377 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
Gma12g00564 377 SMART actin_3 7 377 IPR004000 -
Gma12g00564 377 CDD NBD_sugar-kinase_HSP70_actin 10 183 - -
Gma12g00564 377 Gene3D - 140 340 - -
Gma12g00564 377 PRINTS Actin signature 28 37 IPR004000 -
Gma12g00564 377 PRINTS Actin signature 51 62 IPR004000 -
Gma12g00564 377 PRINTS Actin signature 63 85 IPR004000 -
Gma12g00564 377 PRINTS Actin signature 117 130 IPR004000 -
Gma12g00564 377 PRINTS Actin signature 142 161 IPR004000 -
Gma12g00564 377 PRINTS Actin signature 238 254 IPR004000 -
Gma12g00564 377 Pfam Actin 5 377 IPR004000 -
Gma12g00564 377 Gene3D Actin; Chain A, domain 4 182 273 - -
Gma12g00564 377 Gene3D - 10 371 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00564 Gma-Chr12 4721929 4725393 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00564 1 377 Cytoskeleton Gene Families AT3G12110 96.552 0.0 766
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00564 K10355 - gmx:100813437 757.288
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00564 12 4721929 4725393 Gma12g00564 12 4721929 4725393 ECH
Gma11g01266 11 10792827 10794631 Gma12g00564 12 4721929 4725393 ECH
Gma12g00564 12 4721929 4725393 Gma11g01266 11 10792827 10794631 GST
Gma13g02995 13 44458464 44460268 Gma12g00564 12 4721929 4725393 PCT
Gma15g00370 15 3118415 3121282 Gma12g00564 12 4721929 4725393 PCT
Gma12g00564 12 4721929 4725393 Gma13g02995 13 44458464 44460268 PCT
Gma12g00564 12 4721929 4725393 Gma15g00370 15 3118415 3121282 PCT