Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00560 ATGGGAATTTGTTTGAGCACCCAAATTGAAGCTGGGCTGAATTCAAAGCATGTGAGTGTCGATGCAAAAGATCTCAGCAGTCCAagcagtaaaattacaaaagatctcagcaatccaattagcaataaaattacagaagatctcagcacaccaattagcaataaaattacagaagatctcagcacaccaattagcaataaaattacagaagatctcagcacaccaattagcaataaaattacagaagatctcagcacaccaattagTAAGGTCTCAGAGATCTTAGTGCCTCTGACTCCTCAGATTGAGGGTGAGATCTTGCAGTCATCCAATCTGAAGAACTTTAGTTTGACAGAACTAACAGCTGCCACAAGAAATTTCCGTAAAGACAGTGTGTTAGGAGGAGAAGGTGATTTTGGATCAGTTTTCAAGGGCTGGATTGATAACCACTCACTGGCTGCTGCAAAACCTGGCACGGGCGTTGTTGTTGCTGTGAAAAGACTTAGTTTGGATAGCTTCCAAGGTCACAAGGATCGGTTGGCAAGGCACGGTATGACTCATGAAGCAAGTCTCGAGGCTGAAGTGAACTATCTAGGCCAGCTTTCTCATCCTCATCTAGTGAAATTAATTGGGTATTGCTTTGAAGATAAAGACCGACTTCTGGTCTATGAATTTATGCCTCGTGGTAGCTTGGAGAATCACTTGTTCATGAGAGGGTCATACTTTCAACCTCTTTCTTGGGGTCTACGTTTGAAAGTTGCTCTAGGCGCTGCCAAAGGGCTTGCATTTCTTCACAGTGCTGAAACAAAAGTGATATACCGAGATTTCAAGACCTCAAATGTCTTGCTGGATTCAAATTATAATGCAAAGCTTGCTGATTTGGGGCTGGCAAAGGACGGACCAACACGTGAGAAAAGTCATGCCTCCACCAGGGTAATGGGAACCTATGGATATGCAGCTCCTGAATATCTAGCCACAGGTAATCTGAGTGCTAAGAGTGATGTCTTCAGTTTTGGAGTAGTCCTGCTGGAAATGTTATCTGGCAGGAGGGCTGTGGACAAGAATAGACCATCAGGACAACACAATTTGGTGGAATGGGCCAAACCATACTTATCCAACAAACGCAAACTTTTGCGTGTGTTGGATAATCGTCTTGAAGGCCAATATGAATTAGATGAGGCATGTAAGGTAGCTACCCTCTCTCTGCGATGCCTTGCAATAGAATCAAAGTTGAGACCAACCATGGACGAGGTTGCCACGGATTTGGAGCAGCTCCAGGTCCCCCATGTGAAACAAAATCGTAGAAAAAGTGCTGATCATTTTACCCATGGTAGAATTGCCACTGCTTCTGCTTCCCCGCTCTCACGTGACATTGCAAATACACATCCTTGA 1392 0.3915 MGICLSTQIEAGLNSKHVSVDAKDLSSPSSKITKDLSNPISNKITEDLSTPISNKITEDLSTPISNKITEDLSTPISNKITEDLSTPISKVSEILVPLTPQIEGEILQSSNLKNFSLTELTAATRNFRKDSVLGGEGDFGSVFKGWIDNHSLAAAKPGTGVVVAVKRLSLDSFQGHKDRLARHGMTHEASLEAEVNYLGQLSHPHLVKLIGYCFEDKDRLLVYEFMPRGSLENHLFMRGSYFQPLSWGLRLKVALGAAKGLAFLHSAETKVIYRDFKTSNVLLDSNYNAKLADLGLAKDGPTREKSHASTRVMGTYGYAAPEYLATGNLSAKSDVFSFGVVLLEMLSGRRAVDKNRPSGQHNLVEWAKPYLSNKRKLLRVLDNRLEGQYELDEACKVATLSLRCLAIESKLRPTMDEVATDLEQLQVPHVKQNRRKSADHFTHGRIATASASPLSRDIANTHP 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00560 463 Pfam Protein kinase domain 135 419 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma12g00560 463 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL11-RELATED 83 440 - -
Gma12g00560 463 Gene3D Transferase(Phosphotransferase) domain 1 226 447 - -
Gma12g00560 463 ProSitePatterns Serine/Threonine protein kinases active-site signature. 271 283 IPR008271 GO:0004672|GO:0006468
Gma12g00560 463 Gene3D Phosphorylase Kinase; domain 1 103 225 - -
Gma12g00560 463 PANTHER OS01G0588500 PROTEIN-RELATED 83 440 - -
Gma12g00560 463 SUPERFAMILY Protein kinase-like (PK-like) 111 426 IPR011009 -
Gma12g00560 463 ProSiteProfiles Protein kinase domain profile. 128 425 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00560 Gma-Chr12 4680336 4684031 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00560 105 422 Glycoside Hydrolase AT3G07070 46.273 1.11e-89 277
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Gma12g00560 Pkinase 4.1e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00560 - - gmx:100812366 906.746
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00560 12 4680336 4684031 Gma12g00560 12 4680336 4684031 ECH
Gma12g00560 12 4680336 4684031 Gma11g01261 11 10749223 10754145 GST
Gma13g03002 13 44510723 44515657 Gma12g00560 12 4680336 4684031 PCT
Gma15g00362 15 3071328 3074366 Gma12g00560 12 4680336 4684031 PCT
Gma12g00560 12 4680336 4684031 Gma13g03002 13 44510723 44515657 PCT
Gma12g00560 12 4680336 4684031 Gma15g00362 15 3071328 3074366 PCT