Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00557 ATGGCTGTGGCCAACAATGTGCTTTGCATTTTCTTCATTATCTCCTTAACATGTATGGTTCAAGCTCGAATCCCAGGGGTTTACTCTGCTGGTGCATGGCAAAGTGCCCACGCCACCTTCTACGGAGGCTCCGATGCTTCCGGCACCATGGGGGGAGCGTGTGGGTATGGAAACCTGTACAGCCAGGGTTATGGTGTGAACACGGCGGCATTGAGCACGGCGCTCTTCAACAGCGGGCTTAGCTGCGGTGCGTGTTTTGAGATAAAGTGCGCAAACGACAGGCAGTGGTGCCACTCCGGCAGTCCTTCCATCTTCATCACCGCCACCAACTTTTGCCCTCCCAACTTCGCTCTTCCTAACGACAATGGCGGCTGGTGCAACCCTCCTCGCCCTCACTTCGACCTCGCCATGCCCATGTTCCTTAAAATCGCCGAATACCGCGCCGGAATCGTCCCCGTTGCCTATCGCCGGGTGCCATGCAGAAAGCACGGAGGGATAAGGTTCACGATAAACGGATTCCGTTACTTCAACCTGGTGCTGATTAGCAACGTAGCGGGTGCGGGTGATATCGTGCGCACGTACGTGAAGGGCACCCGAACCGGGTGGATGCCAATGAGCCGTAACTGGGGTCAGAACTGGCAGTCAAACGCGGTTTTGGTGGGCCAGGCCCTGTCCTTTCGTGTCACCGGCAGCGACCGCCGCACCTCAACCTCGTGGAACATCGCTCCACCCAATTGGCAATTCGGTCAAACTTTCACCGGAAAGAATTTCCGTGTCTGA 780 0.5641 MAVANNVLCIFFIISLTCMVQARIPGVYSAGAWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNSGLSCGACFEIKCANDRQWCHSGSPSIFITATNFCPPNFALPNDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVAYRRVPCRKHGGIRFTINGFRYFNLVLISNVAGAGDIVRTYVKGTRTGWMPMSRNWGQNWQSNAVLVGQALSFRVTGSDRRTSTSWNIAPPNWQFGQTFTGKNFRV 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00557 259 PRINTS Expansin signature 63 77 IPR002963 GO:0009664
Gma12g00557 259 PRINTS Expansin signature 90 101 IPR002963 GO:0009664
Gma12g00557 259 PRINTS Expansin signature 104 114 IPR002963 GO:0009664
Gma12g00557 259 PRINTS Expansin signature 123 140 IPR002963 GO:0009664
Gma12g00557 259 PRINTS Expansin signature 140 153 IPR002963 GO:0009664
Gma12g00557 259 PRINTS Expansin signature 164 176 IPR002963 GO:0009664
Gma12g00557 259 PRINTS Expansin signature 176 197 IPR002963 GO:0009664
Gma12g00557 259 PRINTS Expansin signature 211 232 IPR002963 GO:0009664
Gma12g00557 259 PRINTS Expansin signature 240 256 IPR002963 GO:0009664
Gma12g00557 259 PRINTS Expansin/Lol pI family signature 32 47 IPR007118 GO:0005576
Gma12g00557 259 PRINTS Expansin/Lol pI family signature 50 68 IPR007118 GO:0005576
Gma12g00557 259 PRINTS Expansin/Lol pI family signature 72 90 IPR007118 GO:0005576
Gma12g00557 259 PRINTS Expansin/Lol pI family signature 148 164 IPR007118 GO:0005576
Gma12g00557 259 PRINTS Expansin/Lol pI family signature 202 216 IPR007118 GO:0005576
Gma12g00557 259 PRINTS Expansin/Lol pI family signature 240 254 IPR007118 GO:0005576
Gma12g00557 259 SUPERFAMILY Barwin-like endoglucanases 32 183 IPR036908 -
Gma12g00557 259 Gene3D - 165 257 IPR036749 -
Gma12g00557 259 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 51 165 IPR007112 -
Gma12g00557 259 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 175 254 IPR007117 -
Gma12g00557 259 Gene3D - 19 161 IPR036908 -
Gma12g00557 259 SMART dpbb_1 68 155 IPR007112 -
Gma12g00557 259 SUPERFAMILY PHL pollen allergen 162 254 IPR036749 -
Gma12g00557 259 PANTHER EXPANSIN-A15 5 258 IPR002963 GO:0009664
Gma12g00557 259 PANTHER EXPANSIN 5 258 - -
Gma12g00557 259 Pfam Expansin C-terminal domain 166 243 IPR007117 -
Gma12g00557 259 Pfam Lytic transglycolase 68 155 IPR009009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00557 Gma-Chr12 4664488 4666971 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00557 1 259 Expansin Gene Family AT2G39700 83.012 1.57e-162 449
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00557 - - gmx:100811296 553.903
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00557 12 4664488 4666971 Gma12g00557 12 4664488 4666971 ECH
Gma12g00557 12 4664488 4666971 Gma18g00357 18 3085445 3087144 ECH
Gma12g00557 12 4664488 4666971 Gma11g02218 11 37448228 37450037 ECH
Gma12g00557 12 4664488 4666971 Gma02g02346 02 49524639 49526505 ECH
Gma12g00557 12 4664488 4666971 Gma14g00584 14 5690498 5692459 ECH
Gma11g01259 11 10732993 10735054 Gma12g00557 12 4664488 4666971 ECH
Gma18g01665 18 46708425 46713409 Gma12g00557 12 4664488 4666971 ECH
Gma07g01232 07 16060415 16064554 Gma12g00557 12 4664488 4666971 ECH
Gma12g00557 12 4664488 4666971 Gma11g01259 11 10732993 10735054 GST
Gma13g03005 13 44534715 44536116 Gma12g00557 12 4664488 4666971 PCT
Gma15g00359 15 3049513 3051020 Gma12g00557 12 4664488 4666971 PCT
Gma12g00557 12 4664488 4666971 Gma13g03005 13 44534715 44536116 PCT
Gma12g00557 12 4664488 4666971 Gma15g00359 15 3049513 3051020 PCT