Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00552 ATGGTACACGTCAATAAGAAGGAAGAACTTTCTATTGCTGAACAGCCAACGTTTGCATTTGCCTTTGCCTTCAAAGGTGCAGAGCGGAGGCCAATCTCATCATTTGACACACACACGCTCAAGTTGGAACTGGTTTTGGTTGAAGACGCGACACGCAAAAAGGTCACAGTATCGATTGATAGAAGGGGTGAATTGAATTTTGTCACCTTGATGGATCCTCATATCAAGTCCAATTTCATCAATGGCGTTAAACCCAGCCAAGTGCCCAACACGGTCGATGCAGAGGATCACTTCTTTGACCCTGTTAATGGGATGATGAAACCCTTTGATTTTCGACTCATGGATAACCCATTTCTTATTCCGCCTGATCCAAATGCTGCTCAAAATCCTTTTTCCTTGTCCAATGATGAAGACTCTCCAGTGGATGAGATTGATTTTTCTGCCACTGTCCTACGCTACATAAACCAAATGCTTATGGAAGAGGACTTGGAGGCAAAGCCGTGTATGTTCCATGATTCCTTGGCTCTCCAAGCTGCTGAGAAATCATTCTATGAGGTCATTGGTGAGACATACCCTTCTTCTTCTTCTTCTTCTTCCATCCAAAACTATCACAACGTGGACAGCCCTGATGAAAGTAGCTTCAGTGGTACAACGACTAGCACCGGTAACTCGTTTGGGTCGCAATGGAATAACGTCGATCTTGCTGACTACAAGCCTTCCATACTGCAAACCACTTTTCCTACTGACTTTGTTTTCCAGGCCAGTTCAATCCAATCTTCAATGAACACCACGAGCAAATTTGCCGTAACCAATAGTGAATTCTTGGCTAGTTCCGCGGCTGGATTTTTGGGTCCAGGTTCAACAAACTTGTTTAGCAAGAGTGAGTCTGTACTGCAATTTGAGAGGGGTGTGGAGGAAGCCAATAAGTTCCTGCCTAAAGGGAATCCTTTGGTTATTGACTTGGAGAACCCATCTTTTAGAATGGTTCCTCTTCAGCAGGAGGAAATTAAGGCGGAGAGGGATATAGATGAAATTTCTGCCGAGTCAAGAGGAAGGAAGAATCACGAGCGGGAAGATGAAGAAACAGATTTACAAGATGGGAGAAGCAACAAGCAGTCAGCTGTGTACATTGATGACAGTGAGATATCAGAATTGCTTGATAAGGTCCTGCTAGGCACGTGGTGCAGAAATGAACCAGCTCCTTCGTGTATTGGTTACACAGACCTTCCCAGTGGACCATCCTTGGGTAAATTAGAAGAAACAAACAAGTCTGGTGGTGGGAAGAGCCGTGTTAAGAAACAAGGCAACAAGAAGGGAGTTGTGGATCTGAGGACATTGTTGATTCTATGCGCACAAGCTGTTTCTTCAGATGATCATGTATCTGCTAATGAGTTATTGAAGCAGATAAAGCAACATGCTTCTCCACTAGGTGATGGGACTCAGAGGCTGGCCCATTGCTTTGCAAATGCCCTTGAAGCACGCTTGGCTGGCACCGGCACTCAGATTTATACTGCTTTATCTCACAAAAGAACCTCTGCAGCGGACATGGTGAAAGCTTACCAAATGTATATTTCTGCCTGTCCATTCAAGAAGCTTTCGATGATTTTTGCAAACCATACAATTTTGCAGCTAGCCAAGGAAGTTGAAACTCTTCATATTATAGATTTTGGCATCCGTTATGGCTTCCAGTGGCCAGCTTTTATTTATCGTTTATCAAAACAACCTGGTGGGCCTCCCAAGCTGCGTATTACAGGGATAGAGCTCCCACAACCTGGTTTCAGGCCAGCAGAGAGAGTCCAAGAGACAGGGCTTCGACTTGCAAGGTATTGTGATCGCTTTAATGTTCCATTTGAGTTCAATGCCATTGCACAGAAATGGGAAACCATCAAAATTGAGGACTTGAAGATAAAGGAAAATGAACTTCTTGTTGCGAATGCTATGTTTCGATTTCAAAATCTACTTGATGAGACAGTTGTGGTGAATAGTCCCCGAGATGCTGTTTTAAAGTTAATAAGGAAAGCAAATCCTGCAATCTTTTTACATGCTACTGTCAATGGGAGCTATAATGCTCCATTCTTCGTGACACGGTTCCGGGAGGCCCTTTTTCATTATTCTACTTTGTTTGATGTGCTTGATACCAATGTTGCTCGGGAAGATCCAATGAGGTTGATGTTTGAGAGAGAGTTCTTTGGGCGGCAGGTAATGAATATTGTAGCTTGTGAGGGTAGTGAGAGGGTTGAGAGGCCTGAGACATACAAGCAATGGCAGGTTAGGAACATGAGGGCTGGATTTAAGCAATTGCCCTTGGATAAACATCTCATTAACAAATTAAGATGCAAGTTGAAAGGTGTGTACCACAGTGATTTCATGCTTCTTGAAGATGGCAATTACATGCTGCAAGACTCGTTTGGTGGTTTTCCAACCATCGATCCTTCTTCACTGGAAGACAACAACGACTTCTCAGAAACTGCAAAGTTCATAATGATTTTGAAAGCAGCTGCCAAGGCAGAAACCGTTCATGTTATTGATTTTGGCATCCTATATGGTTTCCAGTGGCCAAATCTTGTTAAGTTTTTGTCTGATAGGGAGGGTGGACCTCCCAAACTTAGGATTACAGGGATAGAGTTTCCCAACATGGCTTTCGCCCCACAGAAAGAATTGAGGAAACGGGTCGCCACCTGGCTAACTATTCTTCGAGGTATAGTCCCACTAGCACTTGCTGATCACTTGAGTCTTGAGATATTTCAGCATGTTGCAATGGTGAAGCTTGTTTTGCTGGTTATATTGTTTGATGTTCTGGTACCTACTTGCTTAACCTTCAGCTGCTGCGGTGAAGATTGTACCAAGCTTTACATCAAGTTACTCCGTAAAATTATGGCACGACTTTTCGGGTAG 2895 0.4363 MVHVNKKEELSIAEQPTFAFAFAFKGAERRPISSFDTHTLKLELVLVEDATRKKVTVSIDRRGELNFVTLMDPHIKSNFINGVKPSQVPNTVDAEDHFFDPVNGMMKPFDFRLMDNPFLIPPDPNAAQNPFSLSNDEDSPVDEIDFSATVLRYINQMLMEEDLEAKPCMFHDSLALQAAEKSFYEVIGETYPSSSSSSSIQNYHNVDSPDESSFSGTTTSTGNSFGSQWNNVDLADYKPSILQTTFPTDFVFQASSIQSSMNTTSKFAVTNSEFLASSAAGFLGPGSTNLFSKSESVLQFERGVEEANKFLPKGNPLVIDLENPSFRMVPLQQEEIKAERDIDEISAESRGRKNHEREDEETDLQDGRSNKQSAVYIDDSEISELLDKVLLGTWCRNEPAPSCIGYTDLPSGPSLGKLEETNKSGGGKSRVKKQGNKKGVVDLRTLLILCAQAVSSDDHVSANELLKQIKQHASPLGDGTQRLAHCFANALEARLAGTGTQIYTALSHKRTSAADMVKAYQMYISACPFKKLSMIFANHTILQLAKEVETLHIIDFGIRYGFQWPAFIYRLSKQPGGPPKLRITGIELPQPGFRPAERVQETGLRLARYCDRFNVPFEFNAIAQKWETIKIEDLKIKENELLVANAMFRFQNLLDETVVVNSPRDAVLKLIRKANPAIFLHATVNGSYNAPFFVTRFREALFHYSTLFDVLDTNVAREDPMRLMFEREFFGRQVMNIVACEGSERVERPETYKQWQVRNMRAGFKQLPLDKHLINKLRCKLKGVYHSDFMLLEDGNYMLQDSFGGFPTIDPSSLEDNNDFSETAKFIMILKAAAKAETVHVIDFGILYGFQWPNLVKFLSDREGGPPKLRITGIEFPNMAFAPQKELRKRVATWLTILRGIVPLALADHLSLEIFQHVAMVKLVLLVILFDVLVPTCLTFSCCGEDCTKLYIKLLRKIMARLFG 964
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00552 964 ProSiteProfiles GRAS family profile. 434 815 IPR005202 -
Gma12g00552 964 MobiDBLite consensus disorder prediction 192 222 - -
Gma12g00552 964 Pfam GRAS domain family 443 798 IPR005202 -
Gma12g00552 964 Pfam GRAS domain family 828 887 IPR005202 -
Gma12g00552 964 ProSiteProfiles GRAS family profile. 829 964 IPR005202 -
Gma12g00552 964 MobiDBLite consensus disorder prediction 337 373 - -
Gma12g00552 964 PANTHER SCARECROW-LIKE PROTEIN 14 118 800 - -
Gma12g00552 964 PANTHER SCARECROW-LIKE PROTEIN 14 828 887 - -
Gma12g00552 964 MobiDBLite consensus disorder prediction 337 367 - -
Gma12g00552 964 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 118 800 IPR005202 -
Gma12g00552 964 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 828 887 IPR005202 -
Gma12g00552 964 MobiDBLite consensus disorder prediction 407 435 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00552 Gma-Chr12 4619557 4625233 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00552 829 889 GRAS Transcription Factor Family AT1G07530 53.226 6.42e-14 74.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Gma12g00552 GRAS 1.5e-106 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00552 - - gmx:100815586 1687.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00552 12 4619557 4625233 Gma12g00552 12 4619557 4625233 ECH
Gma11g01254 11 10681268 10684474 Gma12g00552 12 4619557 4625233 ECH
Gma18g01671 18 46942475 46944877 Gma12g00552 12 4619557 4625233 ECH
Gma07g01236 07 16133120 16136105 Gma12g00552 12 4619557 4625233 ECH
Gma12g00552 12 4619557 4625233 Gma11g01254 11 10681268 10684474 GST
Gma13g03009 13 44572503 44574101 Gma12g00552 12 4619557 4625233 PCT
Gma15g00354 15 3005659 3007820 Gma12g00552 12 4619557 4625233 PCT