Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00551 ATGGAGTCAAACTTTCCAGGTGCTTATCACCTGTTTGGTGAAGACCAGGGCATACCGTATCTCTCAGACTCGCTTGGTTTTCCAACCATGGATCCTTCTTCACCGGAAGACAACGATTTCTCAGAAACTGTCAAGTTCATAAGCCAAATCCTCATGGAAGAAAACGTTGACCAGAGGCCATTCTATGACTCACTCACCTTGCGAATTACGGAGAAATCCTTCTACGATGCTCTCACTGGCAACCAACCCCCTTTTGTTCTTTGCTCCGAAGCTGAAACCAACACCATAACCAGCAACAACAGTGGCAGCAATTTTTTAAATGAAAATTCTCGTGAGTTAAACATCCCTTCCCCACTCTCTGTTTCTGTTTCTGCTATTCACTTTAACCCCAATCCTCTTTCTCAACCACTGCCATCAGTTACAGTTAGTGACCGGGTCTCAGTTTTGGATTCTTCTATTGCCAAACTCTTAGCGCAGAATATTTCCATTGAGGTTGATTCTGTTTCCAAGTTTAGGAGAGGCTTGGAGGAAGCTACCAAGTTTCTTCCTCCGGAGCCTAAACTTGTAACTGGTCTGGATTTATATAGAGAGCAAGCAATCAATTCGTCCGGAGACACTTCGTATAGGTTGAATAGTAGGAAGAATCACGGGTGTGAAGTGAGAGACACCAGAGAAGAAGAAGAAGAAGAAGGAGGGAGAAGTAACAAGCAATCAGCACTTTCCCTTGTTGATGAGACTGACCTGTCAGATGCTTTTGATCAGGTGCTGCTTCACGAGGAAAACTTGTGGAATGAACACACTTGTTTGCAGAGTGAAGCAGAGAAGGTTGAGGGACCAAATGGAGGGAAGGGTGGTTCAGACAAAAAAGTGAGGAAGAAGAAGAAAACAGTGGACTTGAGGAATCTTCTGTTGATGTGTTCACAAGCTGTGTATGCCAGTGACATCAGGGCTGCCAATGAATTGCTAAAGCAGATTAGGCAACACTCTTCTCCCATTGGGGATGCATCACAGAGGTTGGCTCATTACTTTGCCAATGGCCTCGAGGCACGCTTGGTTGGGGATGGTACAAGTACCCAAGGAATGTATACTTTTCTGAGCTCTAAGAACAACACTTTTTCTGAGTTACTCAAGGCATACCAGGTTTTCAGTTCCTCCAGCCCTTTCAAGAAGTTTGCATATTTATTTGAAAATACAATGATTATGAAAGCAGCTGCAAGTGCAGAAACCGTCCATATTATTGATTTTGGCATCCTACACGGTTTCCAGTGGCCAATGCTCATTAGGCTTTTGTCAAATAGGGAGGGTGGACCTCCCAAGCTTAGGATCACAGGGATAGAGTTTCCCCAACCTGGCTTTCGTCCCACAGAAAAAATTGAGGAAACGGGTCGCCACCTGGCTAACTATTGTAAGCGTTACAATGTTCCCTTTGAGTATAATGCCATATCATCAAGGAACTGGGAAACCATTCAGCTTGAAGCCCTCAAAATTGCAAGCAATGAGCTAGTTGCTGTCTACTGTCACCAGAGGTTTGAGAATTTACTGGATGAGTGTACTATTGAAGTGAACAGTCCTAGAAATGCAGTCCTGCATTTGATCAGGAAGATAAATCCGGATATTTTTACTCACTCCATCACTAACGGATCATATAATGCCCCTTTCTTTACCACGCGGTTTAGGGAGGCTCTCTTTCATTATTCTGCCATTTCTGATAAGAATGACACTGTCATATCTCGTGAAAACGAAAGGAGGTTGATGGTTGAGAGAGAGCTCTATGGCAGGGAGATTATGAATGTTATAGCATGTGAAGGTTCTGACAGGATTGAGAGGCCTGAGACCTACAAACGGTGGCAGGTTAGGAATATGAAGGCTGGTTTCAAGCAGCTACCACTGAATGAGGAATTAATGGCCAAATTTAGGAGTAAGTTAAAGGAATACCACAGAGATTTTGTCTTAGATGAAAATAACAACTGGATGCTTCAAGGTTGGAAGGGCCGCATTTTGTTTGCTTCCTCTTGTTGGGTGCCGGCATAA 2031 0.4382 MESNFPGAYHLFGEDQGIPYLSDSLGFPTMDPSSPEDNDFSETVKFISQILMEENVDQRPFYDSLTLRITEKSFYDALTGNQPPFVLCSEAETNTITSNNSGSNFLNENSRELNIPSPLSVSVSAIHFNPNPLSQPLPSVTVSDRVSVLDSSIAKLLAQNISIEVDSVSKFRRGLEEATKFLPPEPKLVTGLDLYREQAINSSGDTSYRLNSRKNHGCEVRDTREEEEEEGGRSNKQSALSLVDETDLSDAFDQVLLHEENLWNEHTCLQSEAEKVEGPNGGKGGSDKKVRKKKKTVDLRNLLLMCSQAVYASDIRAANELLKQIRQHSSPIGDASQRLAHYFANGLEARLVGDGTSTQGMYTFLSSKNNTFSELLKAYQVFSSSSPFKKFAYLFENTMIMKAAASAETVHIIDFGILHGFQWPMLIRLLSNREGGPPKLRITGIEFPQPGFRPTEKIEETGRHLANYCKRYNVPFEYNAISSRNWETIQLEALKIASNELVAVYCHQRFENLLDECTIEVNSPRNAVLHLIRKINPDIFTHSITNGSYNAPFFTTRFREALFHYSAISDKNDTVISRENERRLMVERELYGREIMNVIACEGSDRIERPETYKRWQVRNMKAGFKQLPLNEELMAKFRSKLKEYHRDFVLDENNNWMLQGWKGRILFASSCWVPA 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00551 676 ProSiteProfiles GRAS family profile. 290 674 IPR005202 -
Gma12g00551 676 MobiDBLite consensus disorder prediction 273 292 - -
Gma12g00551 676 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 26 675 IPR005202 -
Gma12g00551 676 Pfam GRAS domain family 299 673 IPR005202 -
Gma12g00551 676 MobiDBLite consensus disorder prediction 212 234 - -
Gma12g00551 676 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 26 675 - -
Gma12g00551 676 MobiDBLite consensus disorder prediction 205 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00551 Gma-Chr12 4613052 4615756 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00551 43 676 GRAS Transcription Factor Family AT1G07530 45.911 0.0 558
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Gma12g00551 GRAS 1.7e-109 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00551 - - gmx:100815586 1265.75
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00551 12 4613052 4615756 Gma12g00551 12 4613052 4615756 ECH
Gma11g01252 11 10673720 10676295 Gma12g00551 12 4613052 4615756 ECH
Gma12g00551 12 4613052 4615756 Gma11g01253 11 10677537 10680643 GST
Gma13g03010 13 44582413 44584268 Gma12g00551 12 4613052 4615756 PCT
Gma15g00353 15 2995010 2996868 Gma12g00551 12 4613052 4615756 PCT
Gma12g00551 12 4613052 4615756 Gma13g03009 13 44572503 44574101 PCT
Gma12g00551 12 4613052 4615756 Gma15g00354 15 3005659 3007820 PCT