Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00550 ATGGAGGCCAACTTTCCCAGAAGAGCTCACCAGTTTGGTGAAGAAGAGGAGAGCATATTGTATGTCTCTGATTCTCTTGGTTTTGCAGCGACGGACCCGTCGTTAAGGGACCCTTCTCTGGAAGACAATGACTTCTCAGAAACTGCAAAGTTCATAAACCAAATCCTCATGGAAGACAACGTTGAACAGATGCCATTCTATGATTCACTCAACTTGCAAGTTACAGAGAAATCCTTCTACAACGCTCTCACTGGCAACATACCTCTTTCCCCCAATCAACATCCCCTTGTTCTCAGTCCCCAAGCTGAAACCACTCCCACCACCAGCAACAGCAGCAACAACAGCAACCACAACTTTTTAGATGAAAATTCTCTTACTGTTAATCATGGCCTCTCAAATTTGGATTCTTCCACTGCCAAACTCTTGGCACACAATATTTTCAACGATGCTGATTCCCTTTCCCAGTTTAGGAGAGGCTTGGAGGAAGCTACCAGGTTTCTTCCTCCTGGCCCTAAGCTTGTAGCTGGTCTAGATTCAAAGGGAGAGGAACCAATCAATACATTGGGAGAGAATTCCTATGGGTCTAAGGGTAGGAAGAATCACGAGCGCGAAGATATAGACACCAGAGAAGAAGAAGAAAGGAGAAGTAACAAGCAATCAGCACTTAGCCTTGTTGATGAGAGTGACTTGTCAGATGCTTTTGATCGAGTTGTGCTGCTTAGTGTGGAAAATGTTTGTAATGAACACTGTAGTTTGCAGAGTGAAACAGTGAAGGCTGTAGAGCCAGGTGGAGTGAAGGGTCGTCCTAAGAATCAAGCGACAAACAAGGAAACAGTAGATTTGAGGAATCTTCTGATGATGTGTTCACAATCTGTGTATGCCAATGACAAAAGAGCTGCCAATGAATTGCTAGAGCAGATTAGGCAGCACTCTTCTCCCTCTGGGGATGCATTACAGAGGTTGGCTCATTACTTCGCCAATGGCCTCGAAGCACGCTTGGTTGGGGAAGGAATGTTTTCTTTTCTGAAGTCTAAGAGGAGCACTGCTGCTGAGTTTCTGAAGGCACACCAAGATTTTCTATCAGTCAGCCCTTTCAAGAAGTTTACATATTTCTTTGCAAATAAAATGATTATGAAAGCAGCTGTCAAGGCAGAAACCGTCCATATTATTGATTTTGGTATCCAATATGGTTTTCAATGGCCAATGCTTATTAAGTTTTTATCAAATAGAGAGGGTGGACCTCCCAAGCTGAGGATCACAGGGATAGATTTTCCCCAACCTGGTTTTCGCCCCACAGAAAAAATTGAGGAGACAGGTTGCCGTCTTGCTAACTATTCTAAGCGTTACAGCATTCCCTTTGAGTACAATGCCATAGCATCAAGGAACTGGGAAACCATTCAGGTTGAAGCCCTTAATATTGAGACCAACGAGCTAGTTGCTGTGAACTCTCTGATGAAGTTTGAGAATTTAATGGATGAGACTATTGAAGTGGACAGTCCTAGAAATGCTGTCCTACACTTGATCAGGAAGATAAATCCACATATTTTTACTCAGTGCATTGTTAATGGAACATATAATGCCCCTTTCTTTACCACGCGGTTTAGGGAGGCACTCTTCCATTTCTCTACTATTTATGATCTGTGTGACACTGTCATACCTCGTGAAAACGAATGGAGGATGTTGATTGAGAGAGAGGTTTTAGGCCGGGAGGCTATGAATGTTATAGCATGCGAAGGTTCTGAGAGGGTTGAGAGGCCCGAGACATACAAACAGTGGCAGGCTAGGAATATGAAGGCTGGTTTCAAGCAGCTACCACTGAATGAGGAATTATTGGCCAAATTTAGGAATGAGTTAAGGAAATCGTACCACAGAGATTTTGTCTTAGATGAAGATAAGAACTGGATGCTTCAAGGTTGGAAGGGCCGCATTTTAGCTCATAGTAGACTAAAGTTTCTGATATCCTTGCTCTGGCAGCCTACTTTGCTGGTAGAAATTAGACTACTGAGTGTCATGCAAATTCTGTAA 2025 0.4326 MEANFPRRAHQFGEEEESILYVSDSLGFAATDPSLRDPSLEDNDFSETAKFINQILMEDNVEQMPFYDSLNLQVTEKSFYNALTGNIPLSPNQHPLVLSPQAETTPTTSNSSNNSNHNFLDENSLTVNHGLSNLDSSTAKLLAHNIFNDADSLSQFRRGLEEATRFLPPGPKLVAGLDSKGEEPINTLGENSYGSKGRKNHEREDIDTREEEERRSNKQSALSLVDESDLSDAFDRVVLLSVENVCNEHCSLQSETVKAVEPGGVKGRPKNQATNKETVDLRNLLMMCSQSVYANDKRAANELLEQIRQHSSPSGDALQRLAHYFANGLEARLVGEGMFSFLKSKRSTAAEFLKAHQDFLSVSPFKKFTYFFANKMIMKAAVKAETVHIIDFGIQYGFQWPMLIKFLSNREGGPPKLRITGIDFPQPGFRPTEKIEETGCRLANYSKRYSIPFEYNAIASRNWETIQVEALNIETNELVAVNSLMKFENLMDETIEVDSPRNAVLHLIRKINPHIFTQCIVNGTYNAPFFTTRFREALFHFSTIYDLCDTVIPRENEWRMLIEREVLGREAMNVIACEGSERVERPETYKQWQARNMKAGFKQLPLNEELLAKFRNELRKSYHRDFVLDEDKNWMLQGWKGRILAHSRLKFLISLLWQPTLLVEIRLLSVMQIL 674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00550 674 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 29 647 IPR005202 -
Gma12g00550 674 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 29 647 - -
Gma12g00550 674 ProSiteProfiles GRAS family profile. 272 651 IPR005202 -
Gma12g00550 674 MobiDBLite consensus disorder prediction 99 121 - -
Gma12g00550 674 MobiDBLite consensus disorder prediction 195 220 - -
Gma12g00550 674 MobiDBLite consensus disorder prediction 167 225 - -
Gma12g00550 674 Pfam GRAS domain family 281 645 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00550 Gma-Chr12 4606638 4608976 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00550 42 649 GRAS Transcription Factor Family AT2G29060 47.368 0.0 550
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Gma12g00550 GRAS 3.8e-109 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00550 - - gmx:100795855 906.746
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00550 12 4606638 4608976 Gma11g01251 11 10663919 10671722 GST
Gma12g00550 12 4606638 4608976 Gma13g03010 13 44582413 44584268 PCT
Gma12g00550 12 4606638 4608976 Gma15g00353 15 2995010 2996868 PCT