Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00549 ATGCTCTCCACGGATTCCCTTTTGGAAAATTTCCCTGGTTCTGTAAACGGATTCATATTTGAAAACGGTCCTGTCTCGGTGTTTTCGAATCAGAATCCGGCAAGTGGGTTTGAGGTGGATGATTCAGTTTCCCCTTCAGAATCTGCCACTGATTCTGGTCCTTCTTCTGGGGCAAGCTCGAATAGAGAACATGTAGAGAGTACTAAACACTCCAATCCAATTCTCAGATACATAAGTGATATTCTCATGGATGAAGAGGATGATTTGGAGAGAAAACCCTGCATGCTGCAGGATTGTTTGAGACTCCAAGCTGCTGAAAAATCATTCTATGATGCATTGGTTCGAAGTTACCCTTCATCACCTCGTCAATTTGATGATAACCCTGACCAAGATGATAATTTTGGTGGAACTACTAGTTCTGAGAGTTTTAGCAGTTATACGACTGATAATTCATGCGAGTCTGATTGGTTTAACGGTGCTAGTGACTTTGATTCCTCTTTCATACAAAGATCTCTAATTTATTCTCCGGAACACGCATATGTAGCTCCTGATCCGTTTAGAGAGACACAAGCTGGGGTCCATTTTTCAAATGGAGCCTGGAATTTGATTCACCCACAGAACAAGCCGCGTGTGATTGAGGATGGTGTGATGCAGGGTTCTGTAACAGCCACAGGATTGAGGGAGAAGAGGAGTTATCTCATGAATGATATGTCACATGAAGAAGAGAGAAGCAACAAGCTTTCTTCTGTCTACTCCGATGATTCGGAGCCATCTAGCATGTTTGATGAGGTGCTGCTTTGTAAGGATGGTAAGAGTCCATCCATTTTTTATGCTGGCCGTGAACCATCACCATCGCAGATTGCTGACTCAGGAGGATCTAATGGGAAGAAAACACGATCAAAGAGAGGTTCCAATAAGGGGACAAGGGCAAGCGTGACGACGGTGGATTTATGGACTTTGCTAATTCAATGTGCACAGGCTGTGGCTAGCTTTGACCAAAGGACTGCAAATGAAACACTGAAGCAGATTAGGCAGCACTCTTCACCTTTTGGCGATGGACTTCAGCGTTTGGCTCATTACTTCGCCGATGGCCTCGAGAAACGGTTAGCTGCTGGGACACCAAAGTTCATTTCCTTTCAGTCAGCATCTGCCGCAGATATGTTGAAAGCATACCGAGTGTATATCTCGGCATCACCATTTCTAAGGATGTCTAATTTCTTGGCAAACCGCACTATTCTGAAGCTAGCGCAAAATGAAAGCAGTCTTCACATTATTGACTTTGGGATTAGCTATGGTTTCCAGTGGCCTTGCCTCATCCAACGGCTTTCAGAGAGGCCAGGCGGGCCTCCAAAGCTTCTTATGACAGGAATTGATCTTCCCCAGCCGGGATTTAGGCCGGCGGAAAGGGTTGAGGAGACGGGGCGGTGGCTGGAGAAGTACTGCAAGAGGTTTGGAGTCCCATTTGAGTACAATTGCCTTGCACAGAAATGGGAGACTATAAGACTTGAGGACCTCAAAATTGATAGGAGTGAAGTAACTGTGGTTAACTGTTTGTACAGATTGAAGAACCTTTCCGATGAAACCGTGACTGCAAACTGTCCAAGAGATGCTTTGCTGAGGTTGATCAGGAGGATCAATCCAAACATCTTCATGCACGGGGTCGTCAATGGCACTTACAATGCACCATTTTTCGTGACAAGGTTCAGGGAAGCACTCTTCCACTTCTCATCATTGTTTGACATGTTTGAAGTTAACGTGCCTCGTGAAGATCCATCTAGGCTTATGATTGAGAAAGGGGTGTTCGGAAGGGATGCAATCAATGTGATAGCATGTGAGGGGGCAGAGAGGGTTGAAAGGCCAGAAACCTACAAGCAGTGGCAAGTTAGGAACCAGAGAGCAGGGTTCAAGCAACTTCCATTGGCCCCAGAGCATGTGAATAGAGTGAAGGAAATGGTGAAGAAGGAACATCATAAAGATTTTGTGGTTGATGAGGATGGCAAGTGGGTTTTGCAAGGATGGAAAGGGCGAATTCTTTTTGCTGTTTCCTCTTGGGTTCCTGCTTGA 2064 0.454 MLSTDSLLENFPGSVNGFIFENGPVSVFSNQNPASGFEVDDSVSPSESATDSGPSSGASSNREHVESTKHSNPILRYISDILMDEEDDLERKPCMLQDCLRLQAAEKSFYDALVRSYPSSPRQFDDNPDQDDNFGGTTSSESFSSYTTDNSCESDWFNGASDFDSSFIQRSLIYSPEHAYVAPDPFRETQAGVHFSNGAWNLIHPQNKPRVIEDGVMQGSVTATGLREKRSYLMNDMSHEEERSNKLSSVYSDDSEPSSMFDEVLLCKDGKSPSIFYAGREPSPSQIADSGGSNGKKTRSKRGSNKGTRASVTTVDLWTLLIQCAQAVASFDQRTANETLKQIRQHSSPFGDGLQRLAHYFADGLEKRLAAGTPKFISFQSASAADMLKAYRVYISASPFLRMSNFLANRTILKLAQNESSLHIIDFGISYGFQWPCLIQRLSERPGGPPKLLMTGIDLPQPGFRPAERVEETGRWLEKYCKRFGVPFEYNCLAQKWETIRLEDLKIDRSEVTVVNCLYRLKNLSDETVTANCPRDALLRLIRRINPNIFMHGVVNGTYNAPFFVTRFREALFHFSSLFDMFEVNVPREDPSRLMIEKGVFGRDAINVIACEGAERVERPETYKQWQVRNQRAGFKQLPLAPEHVNRVKEMVKKEHHKDFVVDEDGKWVLQGWKGRILFAVSSWVPA 687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00549 687 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 28 686 IPR005202 -
Gma12g00549 687 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 28 686 - -
Gma12g00549 687 MobiDBLite consensus disorder prediction 120 146 - -
Gma12g00549 687 MobiDBLite consensus disorder prediction 277 308 - -
Gma12g00549 687 ProSiteProfiles GRAS family profile. 308 685 IPR005202 -
Gma12g00549 687 MobiDBLite consensus disorder prediction 119 146 - -
Gma12g00549 687 MobiDBLite consensus disorder prediction 31 62 - -
Gma12g00549 687 MobiDBLite consensus disorder prediction 31 69 - -
Gma12g00549 687 Pfam GRAS domain family 319 684 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00549 Gma-Chr12 4593640 4596470 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00549 11 686 GRAS Transcription Factor Family AT2G29060 44.186 0.0 535
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Gma12g00549 GRAS 8e-113 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00549 - - gmx:100815586 1368.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00549 12 4593640 4596470 Gma12g00549 12 4593640 4596470 ECH
Gma12g00549 12 4593640 4596470 Gma11g01247 11 10638869 10640911 GST
Gma13g03013 13 44601141 44603633 Gma12g00549 12 4593640 4596470 PCT
Gma15g00351 15 2978156 2985519 Gma12g00549 12 4593640 4596470 PCT
Gma12g00549 12 4593640 4596470 Gma13g03013 13 44601141 44603633 PCT
Gma12g00549 12 4593640 4596470 Gma15g00351 15 2978156 2985519 PCT