Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00540 ATGAGTTTTGTCTTCCGAGGGAGTAGGGGAGATATTGAAAGTGGCTTTTCAGAATATATTCCTGAAAGAACCTTGATGAGGGTTCATCCAGCTCGGCTAGTTAATGGCAATTCTCTAGCTTTTCTTATCACAGGTAATGTTATCACTATTGTATCTAATGCTTTGCTGCTTCATATGAGCAGCTTCTTAATCTGTATCTGGCATGCTTATTTGGCAATTATTTTGATATTCATGATATTAAACTCCCCTCAGATGTTACATCATTTTTTGCTCTGGGTTGTACTGGCTATCTTTGTGATGGCTACAAGTCTGAGGATGTATGCAACTTGTCAACAGCTTCAAGCACAGGCCAGGGCTCATGCTGCAGCAGCCTCTGGGTTGCTTGGCCATGATGAACTTCGTCGTCACATGCCACCATCTATTGCAATTGCAACCAGAGGAAGATTGCAGGGACTTAGACTTCAGCTTGCACTTCTTGACCGTGAATTTGATGAGCTAGATTATGACACTTTGAGAGCTCTGGATTCTGATACTGCTTCTAGTACTCGTTCAATGACCGAGGAAGAGATAAATGCCTTGCCTATTCACACTTACAAAGTTCCAGTCCCACCAAAAGATGGTTCAGCTGGTTTGGCATCCTCTTCAGATGCAGCTGAGGTTAAACAAGAATCTGGAGGAACAGAGGCAGGTACCGGAGGTCCAGAAGATGAGCTGACATGTACTATATGCTTGGACCAAGTTAAGAGGGGGGAGCTTGTTCGAAGCTTACCATGCTTGCATCAGTTTCATGCAAACTGCATTGATCCATGGCTCCGACAACAAGGAACATGTCCTGTGTGCAAATTAAGGATAGGGTCGGTAAGTGGAGGAAACAGGGAGAGCGAGTCCGATGGTTCAGATATTGCATAA 909 0.4411 MSFVFRGSRGDIESGFSEYIPERTLMRVHPARLVNGNSLAFLITGNVITIVSNALLLHMSSFLICIWHAYLAIILIFMILNSPQMLHHFLLWVVLAIFVMATSLRMYATCQQLQAQARAHAAAASGLLGHDELRRHMPPSIAIATRGRLQGLRLQLALLDREFDELDYDTLRALDSDTASSTRSMTEEEINALPIHTYKVPVPPKDGSAGLASSSDAAEVKQESGGTEAGTGGPEDELTCTICLDQVKRGELVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRIGSVSGGNRESESDGSDIA 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00540 302 Pfam Ring finger domain 239 281 IPR001841 -
Gma12g00540 302 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 1 301 - -
Gma12g00540 302 SMART ring_2 240 280 IPR001841 -
Gma12g00540 302 ProSiteProfiles Zinc finger RING-type profile. 240 281 IPR001841 -
Gma12g00540 302 PANTHER TARGET OF ERK KINASE MPK-1 1 301 - -
Gma12g00540 302 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 217 287 IPR013083 -
Gma12g00540 302 MobiDBLite consensus disorder prediction 195 235 - -
Gma12g00540 302 CDD RING-H2_PA-TM-RING 239 281 - -
Gma12g00540 302 SUPERFAMILY RING/U-box 235 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00540 Gma-Chr12 4495259 4501193 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00540 1 301 C3H Transcription Factor Family AT3G55530 61.513 2.50e-114 329
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00540 K16283 - gmx:100805406 464.151
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00540 12 4495259 4501193 Gma12g00540 12 4495259 4501193 ECH
Gma11g01241 11 10588536 10593308 Gma12g00540 12 4495259 4501193 ECH
Gma12g00540 12 4495259 4501193 Gma11g01241 11 10588536 10593308 GST