Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00539 ATGAATTTGGATACGCAACCCGGAACGCCGTCGTATTGGTGCTACAGCTGCACTCGTTTCGTGCACCTCTCTGTCCAAGCCACCATCGCCTGCCCCCACTGTCAAAGCGGTTTCGTCGAAGAGATCCGCGCCGGCGCCGAAGCCTCGCCACGCCACCGTCTAAGTCCTTTCCCTGACGATCCCCTTTCTTTCCGGCGACAGGGCTTCCGCCGCCGTAGGAGAGAAGGTGCCGGCAACCGCTCCCCGTTCAACCCCGTCATCGTCCTCCGCGGCCCCGGCGACGACTCCGCCGCCGCCGACCACGACGGTGCCAGCACGTTCGAGCTCTTCTACGACGACGGCGATGGCACCGGCCTCCGCCCCCTCCCTCCCACCATGTCGGAGTTCCTCCTCGGCTCCGGCTTCGACCGGTTACTGGAACAGTTTGCGCAGATGGAGATGAACGGCTTCGGCCGGCCGGAGAATCCGCCGACGTCGAAGGCGGCGATCGAGTCCATGCCGACGGTCGAGATCGGCGAAACTCACGTCGAAACCGACGCGCACTGCGCCGTGTGCAAAGAAGTGTTTGAGCTCCACGCGGAGGCGCGTGAGTTGCCGTGCAAGCACATCTACCACTCCGAGTGCATCCTCCCGTGGCTCTCGATGCGGAACTCGTGCCCGGTGTGCCGCCACGAGCTTCCTTCCGATTTGGAAACTAGAGTTCCGAGCCAGATCGACGAGGAAGCGATAGGATTAACGATTTGGAGGCTTCCAGGAGGCGGATTCGCCGTAGGGCGATTCTCCGGCGGCCGGAGAACCGGGGAGAGTCATTTGCCGGTGGTGTACACGGAGATGGACGGTGGACTTAACACAAATGGTGGTGCTCCTAGGAGAATTTCTCGTTCTGTTAGAAGCAATAGGGTTAGGGAAAGTCGAGGGTTTGGTAGAGTTTTTCGCAATTTCTTTTCATTCTTTGGAAGAATTGGTTCTAGAAACTCTTCTTCTTCTTCTGAACATGGGTCTGTGAGTAGAAGCCGTAGTCACGTGAGTTCAATGTTCAATAGAAGCTCGCGGAGACATAGCAGGACTTGGGTTATGGATGATTGA 1086 0.5856 MNLDTQPGTPSYWCYSCTRFVHLSVQATIACPHCQSGFVEEIRAGAEASPRHRLSPFPDDPLSFRRQGFRRRRREGAGNRSPFNPVIVLRGPGDDSAAADHDGASTFELFYDDGDGTGLRPLPPTMSEFLLGSGFDRLLEQFAQMEMNGFGRPENPPTSKAAIESMPTVEIGETHVETDAHCAVCKEVFELHAEARELPCKHIYHSECILPWLSMRNSCPVCRHELPSDLETRVPSQIDEEAIGLTIWRLPGGGFAVGRFSGGRRTGESHLPVVYTEMDGGLNTNGGAPRRISRSVRSNRVRESRGFGRVFRNFFSFFGRIGSRNSSSSSEHGSVSRSRSHVSSMFNRSSRRHSRTWVMDD 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00539 361 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHC2A-RELATED 8 308 - -
Gma12g00539 361 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 8 308 - -
Gma12g00539 361 Pfam Ring finger domain 181 223 IPR001841 -
Gma12g00539 361 Pfam Protein of unknown function (DUF1117) 243 351 IPR010543 -
Gma12g00539 361 SMART ring_2 182 222 IPR001841 -
Gma12g00539 361 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 147 229 IPR013083 -
Gma12g00539 361 SUPERFAMILY RING/U-box 162 230 - -
Gma12g00539 361 CDD RING-H2_RNF126_like 182 223 - -
Gma12g00539 361 Pfam zinc-ribbon 11 42 IPR039525 GO:0061630
Gma12g00539 361 MobiDBLite consensus disorder prediction 323 347 - -
Gma12g00539 361 ProSiteProfiles Zinc finger RING-type profile. 182 223 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00539 Gma-Chr12 4488518 4489603 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00539 121 229 C3H Transcription Factor Family AT5G01980 46.789 1.98e-28 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00539 - - gmx:100792874 624.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00539 12 4488518 4489603 Gma12g00539 12 4488518 4489603 ECH
Gma11g01240 11 10580431 10582078 Gma12g00539 12 4488518 4489603 ECH
Gma07g01247 07 16266127 16267455 Gma12g00539 12 4488518 4489603 ECH
Gma12g00539 12 4488518 4489603 Gma11g01240 11 10580431 10582078 GST
Gma13g03020 13 44645690 44647209 Gma12g00539 12 4488518 4489603 PCT
Gma15g00342 15 2932848 2934331 Gma12g00539 12 4488518 4489603 PCT
Gma12g00539 12 4488518 4489603 Gma13g03020 13 44645690 44647209 PCT
Gma12g00539 12 4488518 4489603 Gma15g00342 15 2932848 2934331 PCT