Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00534 ATGGGGGAAGAGGTGAAGACGAGCGAGTACGACGAAGAGCGCGTGATGGAGTGGGAGATGGGTCTCCCAACCGCCAACGATCTCACGCCTCTCTCCCAGCCGCTGATCCCGCCGGAGCTCGCTTCGGCCTTCAGCATCTCGCCGGAGCCCCACCGCACCCTCCTCGAGGTCAACCGCGCCTCGCGCAACACGCTCTCCACAATCCGCGGCGGCGGTAGCGTGCACCAGGCCTTCTCATCCAACAACAACAACAACCACCACTACGACGGCGACGGAGACGGCGGCGACGAGGAGGAGTACGACGACGCCGATCGCGATGGCTCGGGGTCGGATTCCCGGAAGCAGCGGAAGATCGACTGCGGCGTGGCGGAGGAGGCGGACTCGGCGGTGCGGACAGAGACCTCGGCGGAGCGAACGGCGGTGAAGCGGCCGCGGCTGGTGTGGACCCCGCAGCTTCACAAGAGGTTCGTGGACGTGGTGGCGCACCTCGGGATCAAGAACGCGGTGCCGAAGACGATTATGCAATTGATGAACGTGGAAGGGTTGACCCGCGAGAATGTCGCGAGCCATCTCCAGAAGTATCGTCTCTACCTGAAACGGATGCAGGGCCTTTCGAACGAGGGCCCTTCTTCTTCGGATCAGTTATTCGCTTCCACAGCTGTGCCTCAGAGTTTGCATGACTCTGCTCCTCCCAGTGCCCATAGCAATGGCCATGGTCATCTCCCTGTtcccatgatgtccatgccatatccccctcccatgatgtccatgccatacccccctcccatgatgtccGGCATGCCCCATGCCCATGGCCACATGGGCATCCCCATGCCTAATTCCTCCGCCACCTCAGCTTACCATCCTTATAACATGTTGCATCAAAGGGATTGGCCTCACCTTGCTCCTAATGATAAATGA 921 0.5668 MGEEVKTSEYDEERVMEWEMGLPTANDLTPLSQPLIPPELASAFSISPEPHRTLLEVNRASRNTLSTIRGGGSVHQAFSSNNNNNHHYDGDGDGGDEEEYDDADRDGSGSDSRKQRKIDCGVAEEADSAVRTETSAERTAVKRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRMQGLSNEGPSSSDQLFASTAVPQSLHDSAPPSAHSNGHGHLPVPMMSMPYPPPMMSMPYPPPMMSGMPHAHGHMGIPMPNSSATSAYHPYNMLHQRDWPHLAPNDK 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00534 306 Gene3D - 139 202 - -
Gma12g00534 306 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 1 298 - -
Gma12g00534 306 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 144 196 IPR006447 GO:0003677
Gma12g00534 306 MobiDBLite consensus disorder prediction 66 88 - -
Gma12g00534 306 MobiDBLite consensus disorder prediction 66 120 - -
Gma12g00534 306 MobiDBLite consensus disorder prediction 106 120 - -
Gma12g00534 306 Pfam Myb-like DNA-binding domain 147 195 IPR001005 -
Gma12g00534 306 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 140 199 IPR017930 -
Gma12g00534 306 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 1 298 IPR044841 GO:0003700|GO:0006355
Gma12g00534 306 SUPERFAMILY Homeodomain-like 141 200 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00534 Gma-Chr12 4427275 4429609 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00534 1 227 G2-like Transcription Factor Family AT3G46640 60.408 3.02e-85 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Gma12g00534 Myb_DNA-binding 1.2e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00534 - - gmx:100816634 541.576
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00534 12 4427275 4429609 Gma12g00534 12 4427275 4429609 ECH
Gma12g00534 12 4427275 4429609 Gma11g01236 11 10511363 10513998 GST