Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00515 ATGGGAGCTCGTTGCTCTAAATTCTCTCTCTGCTGGTGGCCTTCCCACCTCAAGTCAAACCTTCACAACTTGTCTGATAATGATGATGATGGGAAGAGGGATGAGAATGATCCTCGGGGAGGGTTCAGTGAGTACAGTTTGGATCAGTTAAGAGTTGCAACCTCAGGATTTTCACCTGACAACATTGTCTCAGAGCATGGAGAGAAGGCTCCAAACGTTGTCTACAGAGGGATGCTTGAAGATGATAGGTTGGTTGCTGTGAAGCGCTTCAACAAGTCTGCTTGGCCTGATTCTCGACAATTCCTAGATGAGGCACGTGCTGTGGGGCAGCTAAGGAGTGAAAGATTGGCTAACTTGGTTGGGTGTTGCTGTGAGGGAGAAGAGAGGTTGCTTGTGGCAGAGTTCATGCCCAATGAAACTCTCTCAAAACACCTTTTTCATTGGGAAGCCCAGCCTATGAAATGGGCAATGAGGCTGAGGGTGGCCTTGTATTTAGCTCAAGCATTGGAATACTGCAGCAGTAAAGAAAGGGCATTGTACCATGATCTTAATGCATATAGAATTTTGTTTGATCAGGTATTTCAGCTTTTAACCTGTTTTGTGCCTCTTTCATTGTATTTTGTCAACTTATTTGGTACCAATGGTGGACAGGAAGCCAACCCTAGACTCTCTTGTTTTGGACTCATGAAAAACAGTAGGGATGGCAGAAGCTATAGTACAAATTTAGCCTTCACTCCTCCAGAGTACTTGAGGACAGGAAGGATCACCCCTGAAAGTGTAGTCTACAGTTTTGGCACCCTATTGCTTGGTCTTCTGAGTGGAAAGCATATCCCACCCAGTCATGCACTTGACCTTATACGAGGCAAAAATTTTCTGTTGCTGATGGACTCATGTTTGGAAAGTCATTTTTCAAATGATGATGGGACTGAGTTAGTGAGATTAGCTTCACGCTGTTTACAGTATGAACCTCGTGAGAGACCAAATGTTAAGTTGCTTGTGACTGCTCTAACCCCTCTTCAGAAAGAAACTTCAGTACCATCAAATGTTTTAATGGGCATACCAGATAGGAGTCTATCATCAAAGGAAACGGTTTCGTTGACGCCTTTTGGTGATGCTTGTTCAAGAAGAGATCTGACTGCAATACATGAAATTTTGGAAAAGATAGGCTACAAGGATGATGAAGATGTTGCAAATGAGCTGTCCTTTCAAATGTGGACAAATCAAATACAAGAAACTCTAAATTCTAAGAAGCAAGGCGATTCTGCTTTTCATGCTAGAGACTTCTCCACGGCCATTGACTGCTATACACAATTCATCGATGGTGGAACTATGGTATCACCAACCGTGTATGCCAGGCGCTGCTTGTGCTACCTGATGAATGACATGGCACAAGAAGCACTTGGAGATGCCATGCAAGCTCAATCAATATCTCCCACTTGGCCCACTGCATACTATCTTCAAGCAGCTGCTCTCTTCACCCTTGGCATGGACAATGATGCACAGGAAAGCCTTAAAGATGGCACAACACTGGAAACCAGGAAGTATAGAAATTGA 1554 0.4395 MGARCSKFSLCWWPSHLKSNLHNLSDNDDDGKRDENDPRGGFSEYSLDQLRVATSGFSPDNIVSEHGEKAPNVVYRGMLEDDRLVAVKRFNKSAWPDSRQFLDEARAVGQLRSERLANLVGCCCEGEERLLVAEFMPNETLSKHLFHWEAQPMKWAMRLRVALYLAQALEYCSSKERALYHDLNAYRILFDQVFQLLTCFVPLSLYFVNLFGTNGGQEANPRLSCFGLMKNSRDGRSYSTNLAFTPPEYLRTGRITPESVVYSFGTLLLGLLSGKHIPPSHALDLIRGKNFLLLMDSCLESHFSNDDGTELVRLASRCLQYEPRERPNVKLLVTALTPLQKETSVPSNVLMGIPDRSLSSKETVSLTPFGDACSRRDLTAIHEILEKIGYKDDEDVANELSFQMWTNQIQETLNSKKQGDSAFHARDFSTAIDCYTQFIDGGTMVSPTVYARRCLCYLMNDMAQEALGDAMQAQSISPTWPTAYYLQAAALFTLGMDNDAQESLKDGTTLETRKYRN 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00515 517 Gene3D Tetratricopeptide repeat domain 410 516 IPR011990 GO:0005515
Gma12g00515 517 Gene3D Transferase(Phosphotransferase) domain 1 137 354 - -
Gma12g00515 517 ProSiteProfiles Protein kinase domain profile. 60 340 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma12g00515 517 SUPERFAMILY TPR-like 414 513 IPR011990 GO:0005515
Gma12g00515 517 Pfam Protein tyrosine and serine/threonine kinase 74 335 IPR001245 GO:0004672|GO:0006468
Gma12g00515 517 Gene3D Phosphorylase Kinase; domain 1 31 135 - -
Gma12g00515 517 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 1 517 IPR045845 GO:0004672|GO:0009742
Gma12g00515 517 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 1 517 - -
Gma12g00515 517 SUPERFAMILY Protein kinase-like (PK-like) 41 341 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00515 Gma-Chr12 4305025 4309153 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00515 8 341 Receptor kinase-like Gene Family AT3G58690 28.997 2.81e-34 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XII-1 Gma12g00515 PK_Tyr_Ser-Thr 4.2e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00515 - - gmx:732542 955.281
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00515 12 4305025 4309153 Gma12g00515 12 4305025 4309153 ECH
Gma12g00515 12 4305025 4309153 Gma11g01215 11 10377554 10381686 GST