Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00513 ATGAGGAAGCCCGAGGTTTCTGGAAACAACAACAACAACAACAACATTAATAACAAgcttagaaaagggttgtggtcacctgaagaagatgacaagctcatgaactacatgctaaacagtggacaaggttgttggagcgatgtagccagaaatgctggccttcaaaggtgtggcaaaagttgtcgccttcgatggatcaactacttgaggcctgatcttaaacgaggtgcattctcacaacaagaagaggaactcatcatccacttgcattcccttctcggaaacaGatggtctcaaatagcggcgcgcttaccagggagaacagacaatgaaattaagaatttttggaattcaacaataaagaaaagactcaagaacatgtcatccaacacctcaccaaatggaagcgagtcctcatatgagcctaATAACAGAGACCTTAACATGGCAGGGTTTACTACTTCTAATACCCAAGATCAACAACATGCTGATTTTATGCCTATGTTCAATTCATCATCTCAATCACCCTCCATGCATGCCATGGTTCTCAATTCCATAATTGACAGGTTGCCTATGCTAGAGCATGGACTAAACATGCCATGTTCTGGTGGATTCTTCAATAGCACAGGGCCATGCTTCTCATCATCACAAAGTGGAGTTGACAACAAAGGGATTTATTTGGAAAATGGAGGAGTATTTGGGAGTGTAAATATTGGTGCAGAAGGGGATGTGTATGTTCCCCCTCTAGAGAGTGTTAGCACTACTTCTGACCATAACCTGAAAGTGGAGAGCACATGCAACACAGATACTAACAATAGTTACTTTGATGACATAAACAGTATCCTCCTTAATAATTGCAACATTAATAGCAACAATAAGAGAGCTGAAAATAGGGCTGGTGGGGTGGAGAATTTGTTTCAGGAAGAGTTAACCATTGGAGAGTGGGACTTGGAGGAGTTAATGAAAGATGTTTCATCCTTTCCCTTTCTTGATTTTTCAAATATCCAATAA 1011 0.2512 MRKPEVSGNNNNNNNINNKLRKGLWSPEEDDKLMNYMLNSGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGAFSQQEEELIIHLHSLLGNRWSQIAARLPGRTDNEIKNFWNSTIKKRLKNMSSNTSPNGSESSYEPNNRDLNMAGFTTSNTQDQQHADFMPMFNSSSQSPSMHAMVLNSIIDRLPMLEHGLNMPCSGGFFNSTGPCFSSSQSGVDNKGIYLENGGVFGSVNIGAEGDVYVPPLESVSTTSDHNLKVESTCNTDTNNSYFDDINSILLNNCNINSNNKRAENRAGGVENLFQEELTIGEWDLEELMKDVSSFPFLDFSNIQ 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00513 336 PANTHER MYB DOMAIN PROTEIN 55 1 333 - -
Gma12g00513 336 SMART sant 74 122 IPR001005 -
Gma12g00513 336 SMART sant 21 71 IPR001005 -
Gma12g00513 336 PANTHER MYB TRANSCRIPTION FACTOR 1 333 - -
Gma12g00513 336 CDD SANT 25 69 IPR001005 -
Gma12g00513 336 Gene3D - 19 75 - -
Gma12g00513 336 SUPERFAMILY Homeodomain-like 20 116 IPR009057 -
Gma12g00513 336 ProSiteProfiles Myb-like domain profile. 70 120 IPR001005 -
Gma12g00513 336 MobiDBLite consensus disorder prediction 126 152 - -
Gma12g00513 336 MobiDBLite consensus disorder prediction 1 21 - -
Gma12g00513 336 Pfam Myb-like DNA-binding domain 75 118 IPR001005 -
Gma12g00513 336 Pfam Myb-like DNA-binding domain 22 69 IPR001005 -
Gma12g00513 336 ProSiteProfiles Myb-like domain profile. 17 69 IPR001005 -
Gma12g00513 336 Gene3D - 76 148 - -
Gma12g00513 336 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 70 124 IPR017930 -
Gma12g00513 336 CDD SANT 77 117 IPR001005 -
Gma12g00513 336 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 17 69 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00513 Gma-Chr12 4288357 4290528 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00513 1 332 MYB Transcription Factor Family AT3G08500 42.975 2.10e-74 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gma12g00513 Myb_DNA-binding 9.8e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00513 K09422 - gmx:100786151 655.595
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00513 12 4288357 4290528 Gma12g00513 12 4288357 4290528 ECH
Gma11g01213 11 10354576 10357168 Gma12g00513 12 4288357 4290528 ECH
Gma12g00513 12 4288357 4290528 Gma11g01213 11 10354576 10357168 GST
Gma15g00326 15 2824709 2827357 Gma12g00513 12 4288357 4290528 PCT
Gma12g00513 12 4288357 4290528 Gma15g00326 15 2824709 2827357 PCT