Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00508 ATGGTGGCAACGGCGATCGAGGAAGTGCGAACCCTCTGGATTGGCGATTTACAGTACTGGGTCGACGAGTCCTACCTCTCTCAGTGCTTCGCCCACAGCGGCGAAGTGGTTTCCATCAAAATCATCCGCAACAAGCTGACGGGCCAGCCCGAGGGCTACGGCTTCGTCGAGTTCGTCTCGCACGCCTCGGCCGAAGCCTTTCTCCGAACCTTCAACGGGGCCCAAATGCCCGGCACGGACCAGACCTTCAGGCTCAATTGGGCCTCGTTCGGGGACTCCGGGCCCGACCACTCCATCTTCGTCGGCGATCTCGCCCCCGACGTCACCGATTTCATCCTCCAGGAGACTTTCCGGGCCCATTATCCCTCCGTTAAAGGGTCCAAAGTCGTCACCGACCCCGCCACGGGCCGCTCCAAGGGCTATGGGTTTGTTAAGTTCGCCGATGAGGCCCAGAGGAACCGCGCCATGACTGAAATGAACGGCGTTTATTGCTCCACGCGCCCAATGCGTATCAGCGCGGCTACTCCTAAGAAGAATGCTTCTTTTCAACACCAATATGCTCCACCTAAAGCAATGTATCAATTTCCTGCATACACTGCTCCAGTGAGTACTGTTGCGCCGGAGAATGATGTGAATAATACCACTGTTTGTATTGGTAATTTGGATCTTAATGTGACGGAGGAGGAGCTTAAGCAAGCCTTTGTGCAATTTGGTGATATTGTGTTGGTCAAAATTTATGCGGGCAAAGGATATGGTTATGTTCAATTTGGAACTAGAGCGTCTGCTGAAGATGCCATTCAGAGGATGCAAGGGAAGGTAATAGGTCAGCAAGTGATCCAAATTTCTTGGGGCAGTACCTTGACAGCTAGACAGGATGTACCCGGTGGCTGGGGTGCACAGATGGATCCAAGTCAATGGAgtgcttactacggatatggacagggttatgaatcatatgcttatggtgctactcatgatccctccttgtatgcttatggtgcatatgccggttatgcacaatacCCTCAGAATGTTGAAGGTGCTCAAGACATGTCAGCAGTGTCTATGCCTATGGAGGAATTGTATGACCCCCTGGCAATGCCTGATGTCGATAAATTAAATGCTGCATATCTTTCAATACACGGAAGTTCCATTTTAGGGCGGTCCCTTTGGCAGAGAACTTCACAATCTTTACAGCAAGCCTAG 1206 0.4751 MVATAIEEVRTLWIGDLQYWVDESYLSQCFAHSGEVVSIKIIRNKLTGQPEGYGFVEFVSHASAEAFLRTFNGAQMPGTDQTFRLNWASFGDSGPDHSIFVGDLAPDVTDFILQETFRAHYPSVKGSKVVTDPATGRSKGYGFVKFADEAQRNRAMTEMNGVYCSTRPMRISAATPKKNASFQHQYAPPKAMYQFPAYTAPVSTVAPENDVNNTTVCIGNLDLNVTEEELKQAFVQFGDIVLVKIYAGKGYGYVQFGTRASAEDAIQRMQGKVIGQQVIQISWGSTLTARQDVPGGWGAQMDPSQWSAYYGYGQGYESYAYGATHDPSLYAYGAYAGYAQYPQNVEGAQDMSAVSMPMEELYDPLAMPDVDKLNAAYLSIHGSSILGRSLWQRTSQSLQQA 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00508 401 SUPERFAMILY RNA-binding domain, RBD 6 87 IPR035979 GO:0003676
Gma12g00508 401 CDD RRM1_SECp43_like 11 91 - -
Gma12g00508 401 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 10 90 IPR000504 GO:0003723
Gma12g00508 401 PANTHER POLYADENYLATE-BINDING PROTEIN RBP45A-RELATED 4 342 - -
Gma12g00508 401 CDD RRM2_SECp43_like 96 175 - -
Gma12g00508 401 SUPERFAMILY RNA-binding domain, RBD 95 185 IPR035979 GO:0003676
Gma12g00508 401 SMART rrm1_1 215 282 IPR000504 GO:0003723
Gma12g00508 401 SMART rrm1_1 11 86 IPR000504 GO:0003723
Gma12g00508 401 SMART rrm1_1 98 172 IPR000504 GO:0003723
Gma12g00508 401 Gene3D - 199 291 IPR012677 -
Gma12g00508 401 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 97 176 IPR000504 GO:0003723
Gma12g00508 401 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 99 164 IPR000504 GO:0003723
Gma12g00508 401 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 12 79 IPR000504 GO:0003723
Gma12g00508 401 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 216 279 IPR000504 GO:0003723
Gma12g00508 401 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 214 286 IPR000504 GO:0003723
Gma12g00508 401 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 4 342 - -
Gma12g00508 401 SUPERFAMILY RNA-binding domain, RBD 193 315 IPR035979 GO:0003676
Gma12g00508 401 Gene3D - 9 89 IPR012677 -
Gma12g00508 401 Gene3D - 90 185 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00508 Gma-Chr12 4252402 4255740 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00508 11 292 Eukaryotic Initiation Factors Gene Family AT1G71770 25.517 2.03e-22 97.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00508 - - gmx:100813616 805.053
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00508 12 4252402 4255740 Gma11g01207 11 10317114 10320607 GST
Gma13g03037 13 44762009 44764817 Gma12g00508 12 4252402 4255740 PCT
Gma15g00323 15 2797736 2800083 Gma12g00508 12 4252402 4255740 PCT
Gma12g00508 12 4252402 4255740 Gma13g03037 13 44762009 44764817 PCT
Gma12g00508 12 4252402 4255740 Gma15g00323 15 2797736 2800083 PCT