Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00507 ATGGAAGAGACTCTCAGAGCAATGAAGGAGACGATGATGAAAAATTCCACCGATGAAGGGATAAAAAAATACGGTGCAGAGCCATTTCGCCATTATCACTCCTCTCGCACCAAAAGCGATGAAAGTCTAGTTGCTGCTTTTCTCGTTTTGATCCGTACATTTCCCTCTGCCGTTGCGATCTCCGAAGCTGCGAGATTCTTCTGCCTCGATTGCGCACTTCATGTGATTCCGCTTCTCTCTCTAACCAAGTTTTTACATTTCTGGAACGAATCTGCCTTGGTGAATCTGTCAAGATTGAAGAATAGACTGCAGATTACTTCAGGAAGCTTTATCGAATATTTTGAAGGTCTCACCTATGAACATGTCAACTTCATTTTTTCTGGTGCATCACATGCTCAGGAGAGTTCATACCCTTCAAATTCAAGCTTTTACAAGTTTGGAATTTCTGAACCAGTGAATACTTCATACTATCGTTACGGTCATGGTTATGAGGTAAATCATCACGAACCTCTGGTGGATGAGTATAGGAGACCTTCAGAGAACTCATTGACAATCAATGAACAGTCAGCAGCTGTAAGCACAGAATGGGTTGAAGGTGGAAACACTGGCACACGAGACAATTCTATTGAATGTCCTCGAAGACATCATAGTAATTCAAATGATTATCAGGTTATTTGGCAAGACAATATTGATCCCGACAACATGACCTATGAGGAACTACTTGAATTGGGTGAAGCTGTTGGAACTCAAAGCCGTGGTCTCACCCAAGAACAGATCTCCTCACTTCCGGTGTCAAAGTACAAATGTGGGTTCTTCTCGAGGAAGAAGTCACGGGATGAGAGATGTGTGATTTGCCAGATGGAATATAAAAGAGGGGACAAGCGCATCACCTTGCCATGTAAACATGTTTATCATGCTAGTTGTGGGAACAAATGGCTTAGCATCAATAAGGCCTGCCCTATATGTTACACGGAAGTGTTTGCCGACAAGTCAAAACACAAATAA 1005 0.4239 MEETLRAMKETMMKNSTDEGIKKYGAEPFRHYHSSRTKSDESLVAAFLVLIRTFPSAVAISEAARFFCLDCALHVIPLLSLTKFLHFWNESALVNLSRLKNRLQITSGSFIEYFEGLTYEHVNFIFSGASHAQESSYPSNSSFYKFGISEPVNTSYYRYGHGYEVNHHEPLVDEYRRPSENSLTINEQSAAVSTEWVEGGNTGTRDNSIECPRRHHSNSNDYQVIWQDNIDPDNMTYEELLELGEAVGTQSRGLTQEQISSLPVSKYKCGFFSRKKSRDERCVICQMEYKRGDKRITLPCKHVYHASCGNKWLSINKACPICYTEVFADKSKHK 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00507 334 SUPERFAMILY RING/U-box 275 329 - -
Gma12g00507 334 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 106 332 - -
Gma12g00507 334 Pfam Ring finger domain 281 322 IPR001841 -
Gma12g00507 334 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 106 332 IPR033276 GO:0004842|GO:0016567|GO:0046621
Gma12g00507 334 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 244 328 IPR013083 -
Gma12g00507 334 ProSiteProfiles Zinc finger RING-type profile. 282 322 IPR001841 -
Gma12g00507 334 SMART ring_2 282 322 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00507 Gma-Chr12 4233102 4238474 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00507 107 333 C3H Transcription Factor Family AT3G63530 44.872 4.11e-58 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00507 K19045 - gmx:100805963 483.026
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00507 12 4233102 4238474 Gma12g00507 12 4233102 4238474 ECH
Gma11g01206 11 10292578 10297455 Gma12g00507 12 4233102 4238474 ECH
Gma12g00507 12 4233102 4238474 Gma11g01206 11 10292578 10297455 GST