Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00506 ATGACCAATTCCTACACCTCCAATGACCTTAACTTTTGGTTGGACCTCAATTCACCATGTCTTCTCTCCTCTCCTTCTCCTTCTTCCATCAATCCACCATTCTATTTTCCTTCCAATTATCATAATAGTAATAACTACACAAGTGCCATATCTTCTAATACTCATCATCAGTTCCAACCCTCTCCTCCTCAAAGAAAAGCCCTTCCCCTCCTTCATCCAAGACATGAAGAAGAAGAAGATCTTGAATCTTCATTCAGTGTCATGGAAGTGGACAAGAAAAAGAAAGAGCTGAGTTCATCATCTAGTTTCTTGGATGAAGAAGATGCTGCAGTGACTGTGGCCTTACACTTAGGGCTTCCAAGCACGAGTATTGCATCTTCTGCTGATTTAGCTTCTTCAAGCCTATACTCAACAGAGGCTTCTTCAGACAAAGAAGAAGAAGAAGAAAAAGTAGTACTCACTGATGCTTCGGGGCTTCTTCTGTCAAATAGAATTAACAGAGGACAATATTGGATCCCTACTTCTTCTCAGATTCTGATTGGTCCAACACAGTTCCCATGCCCCCTTTGTTTCAAGACGTTCAACAGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCTCAATATAGGAAGGGACCAGAGTCTCTAAGGGGAACACAACCCACGGCTATGCTAAGACTTCCTTGCTATTGCTGTGCACCGGGGTGCAAGAACAACATCGACCATCCAAGAGCAAAACCACTCAAAGACTTCAGAACCCTTCAAACTCACTACAAGAGAAAGCATGGGACAAAGCCTTTCGTGTGCAGAAAATGTTGCAAAGCATTTGCTGTGAGGGGTGATTGGAGAACTCACGAAAAGAACTGTGGAAAACGCTGGTATTGCTCTTGTGGGTCTGATTTTAAGCACAAAAGATCTCTTAAGGATCATATCAAGGCATTTGGGTATGGACACACGGCTTGTGGAAATGACTGCAACCTAGATCAAGATGATGATCAAGTGGGCTCTGAAATTGAATAA 1026 0.4279 MTNSYTSNDLNFWLDLNSPCLLSSPSPSSINPPFYFPSNYHNSNNYTSAISSNTHHQFQPSPPQRKALPLLHPRHEEEEDLESSFSVMEVDKKKKELSSSSSFLDEEDAAVTVALHLGLPSTSIASSADLASSSLYSTEASSDKEEEEEKVVLTDASGLLLSNRINRGQYWIPTSSQILIGPTQFPCPLCFKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTAMLRLPCYCCAPGCKNNIDHPRAKPLKDFRTLQTHYKRKHGTKPFVCRKCCKAFAVRGDWRTHEKNCGKRWYCSCGSDFKHKRSLKDHIKAFGYGHTACGNDCNLDQDDDQVGSEIE 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00506 341 Gene3D Classic Zinc Finger 184 207 - -
Gma12g00506 341 Gene3D Classic Zinc Finger 246 325 - -
Gma12g00506 341 ProSitePatterns Zinc finger C2H2 type domain signature. 187 207 IPR013087 -
Gma12g00506 341 PANTHER ZINC FINGER PROTEIN WIP2 6 341 IPR043584 GO:0003700|GO:0010468
Gma12g00506 341 ProSiteProfiles Zinc finger C2H2 type domain profile. 185 212 IPR013087 -
Gma12g00506 341 PANTHER TESTA 1 PROTEIN, PUTATIVE-RELATED 6 341 - -
Gma12g00506 341 SUPERFAMILY beta-beta-alpha zinc fingers 251 289 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00506 Gma-Chr12 4224816 4227306 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00506 1 326 C2H2 Transcription Factor Family AT1G51220 58.284 1.21e-123 357
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gma12g00506 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00506 - - gmx:100802239 634.024
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00506 12 4224816 4227306 Gma11g01205 11 10282018 10284511 GST
Gma13g03043 13 44817029 44819284 Gma12g00506 12 4224816 4227306 PCT
Gma15g00318 15 2744930 2747071 Gma12g00506 12 4224816 4227306 PCT
Gma12g00506 12 4224816 4227306 Gma13g03043 13 44817029 44819284 PCT
Gma12g00506 12 4224816 4227306 Gma15g00318 15 2744930 2747071 PCT