Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00501 ATGGAATATGTGCAGTTGCTGTCATGGAAGTTGATGCGGTTTCGTACCAAAGGATTCATTTATCCACTGTCTTCTTGGATCAATAACCCTCTGGCATGTATGAATGCTACAGGGTTTATGGTTTCGTTGCTGCAGAATGGCTGCGGGCAGGCCACAAGTGCTGAAACTGCACTATGGTTACCTTTCTATTATAGGAAAGGGATTCAATTCCGATGCGATTCCGAGCTTGTTAGATCCACGACAAGGTTTCGTTTCCCAGATTCTTTTGTAAAAAAAAATTCTTCCTCTGCCCAACAGGTAAGTTGTAAAAAAATGGACCATGACAAGACTGGGTGCCAAGCTCCTCCTGAAGGTCCTATATTGTGCATCAACAACTGTGGGTTTTTTGGAAGTGCAGCTACCATGAACATGTGTTCTAAATGCCACAAAGACATATTGCTGAAACAGGAGCAGGCCAAGCTTGCAGCATCATCCATTGGGAATATTATGAATGGGTCATCAAGCAGCACTGAAAAGGAACCTGTTGTTGCTGCTGCTGCTAATATTGATATCCCAGTTATTCCAGTAGAGCCTAAAACTGTCTCTGTGCAACCTTTATTTGGTTCAGGTCCAGAGGGGAGTGTTGAGGCAAAGCCGAAGGATGGACCAAAACGTTGCAGCAGCTGCAACAAGCGAGTTGGTTTGACAGGGTTTAATTGTCGATGTGGTGACCTTTTTTGTGCTGTACATCGCTACTCAGACAAGCATAATTGCCCATTTGATTACCGCACTGCCGCTCAAGATGCTATAGCTAAAGCAAACCCAGTTGTCAAGGCTGAAAAGCTTGATAAGATCTAA 837 0.4409 MEYVQLLSWKLMRFRTKGFIYPLSSWINNPLACMNATGFMVSLLQNGCGQATSAETALWLPFYYRKGIQFRCDSELVRSTTRFRFPDSFVKKNSSSAQQVSCKKMDHDKTGCQAPPEGPILCINNCGFFGSAATMNMCSKCHKDILLKQEQAKLAASSIGNIMNGSSSSTEKEPVVAAAANIDIPVIPVEPKTVSVQPLFGSGPEGSVEAKPKDGPKRCSSCNKRVGLTGFNCRCGDLFCAVHRYSDKHNCPFDYRTAAQDAIAKANPVVKAEKLDKI 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00501 278 Pfam AN1-like Zinc finger 219 255 IPR000058 GO:0008270
Gma12g00501 278 PANTHER ZINC FINGER AN1 DOMAIN STRESS-ASSOCIATED PROTEIN 105 278 - -
Gma12g00501 278 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 121 157 - -
Gma12g00501 278 Pfam A20-like zinc finger 120 143 IPR002653 GO:0003677|GO:0008270
Gma12g00501 278 Gene3D - 202 274 IPR035896 -
Gma12g00501 278 SMART AN1_Zf_4 219 256 IPR000058 GO:0008270
Gma12g00501 278 ProSiteProfiles Zinc finger AN1-type profile. 213 259 IPR000058 GO:0008270
Gma12g00501 278 SMART A20_3 119 143 IPR002653 GO:0003677|GO:0008270
Gma12g00501 278 PANTHER AN1-TYPE ZINC FINGER PROTEIN 105 278 - -
Gma12g00501 278 ProSiteProfiles Zinc finger A20-type profile. 116 150 IPR002653 GO:0003677|GO:0008270
Gma12g00501 278 SUPERFAMILY AN1-like Zinc finger 209 273 IPR035896 -
Gma12g00501 278 Gene3D - 104 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00501 Gma-Chr12 4191705 4195580 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00501 112 278 C2H2 Transcription Factor Family AT3G52800 42.515 8.99e-36 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00501 - - gmx:100499857 361.303
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00501 12 4191705 4195580 Gma12g00501 12 4191705 4195580 ECH
Gma11g01199 11 10246538 10246975 Gma12g00501 12 4191705 4195580 ECH
Gma03g01294 03 39078968 39079390 Gma12g00501 12 4191705 4195580 ECH
Gma19g01349 19 42787844 42790454 Gma12g00501 12 4191705 4195580 ECH
Gma12g00501 12 4191705 4195580 Gma11g01199 11 10246538 10246975 GST