Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00500 ATGAACAACAACTGGCTTTCGTTCCCTCTTTCTCCTACTCATTCTTCCTTACCAGCTCATGATCTTCAAGCAACTCAATATCATCAATTTTCCCTTGGGTTAGTGAACGAGAACATGGATAACCCTTTCCAAAATCATGATTGGAATCTGATTAACACCCATAGTAGCAACGAAATTCCAAAAGTGGCTGATTTTCTAGGAGTGAGCAAGTCTGAAAATCAGTCAGACCTTGCAGCCTTAAACGAAATTCATTCAAATGATTCAGATTATCTGTTCACAAACAACAGTCTGGTGCCTATGCAAAACCCTGTGTTGGACACACCTAGCAATGAGTATCAAGAAAATGCTAATAGTAATTTGCAATCATTGACATTATCCATGGGAAGTGGTAAGGATTCAACATGTGAAACCAGTGGTGAAAATAGCACAAACACTACTGTTGAAGTTGCACCTAGAAGAACTTTGGATACATTCGGGCAGAGAACATCCATATATCGTGGAGTAACTCGACATAGATGGACTGGAAGGTATGAAGCTCATCTTTGGGATAATAGCTGTAGAAGGGAAGGCCAATCAAGAAAAGGACGCCAAGATTACAAAACGTATTGTTTCATTTGTTTTGTAACTGCAGGTGGATATGATAAAGAAGAGAAAGCAGCTAGAGCTTATGATTTAGCTGCACTGAAGTACTGGGGGACATCCACCACTACCAACTTTCCAATTAGCAACTATGAGAAGGAATTGGATGAAATGAAACACATGACGAGACAAGAATTTGTTGCCGCCATTAGAAGGAAAAGCAGTGGTTTCTCCAGGGGTGCATCAATGTATCGTGGAGTTACAAGGCATCACCAACACGGAAGATGGCAAGCAAGGATTGGCAGAGTTGCAGGAAACAAAGATCTTTACTTGGGAACTTTCAGTACTGAGGAAGAGGCTGCAGAAGCATACGACATAGCAGCGATAAAGTTCAGAGGTCTCAACGCTGTCACAAACTTTGACATGAGCCGCTACGACGTGAAAGCCATTCTTGAAAGCAACACTCTCCCAATAGGAGGAGGCGCTGCAAAGCGTCTGAAAGAAGCTCAAGCTCTAGAATCTTCGAGAAAACGCGAAGAGATGATTGCACTAGGCTCATCTTCCACGTTCCAATACGGAACCTCAGCAAGCTCTTCTAGGCTTCACGCTTACCCTCTAATGCAGCACCACCACCAGTTCGAGCAACCTCAACCTCTGCTAACTCTTCAAAACCACGACATAAGTTCTTCTCACTTCTCTCACCAGCAAGACCCTTTGCATCATCAGGGTTACATCCAAACGCAGCTTCAGTTGCACCAGCAGAGTGGCGCTTCTTCTTATAGCTTTCAGAATAATGCTCAGTTCTACAATGGTTACCTTCAGAACCACCCTGCATTGCTTCAGGGAATGATGAACATGGGGTCTTCTTCTTCTTCCTCATCTGTGTTGGAGAATAATAATAGTAACAATAATAATAATAATGTTGGTGGGTTTGTGGGAAGTGGGTTTGGTATGGCTTCGAATGCAACGGCGGGGAACACGGTGGGGACAGCGGAGGAGTTAGGGCTGGTGAAGGTGGACTATGACATGCCGGCTGGAGGTTACGGTGGCTGGTCGGCGGCGGACTCCATGCAGACGTCAAATGGTGGGGTGTTCACAATGTGGAATGATTAA 1692 0.4427 MNNNWLSFPLSPTHSSLPAHDLQATQYHQFSLGLVNENMDNPFQNHDWNLINTHSSNEIPKVADFLGVSKSENQSDLAALNEIHSNDSDYLFTNNSLVPMQNPVLDTPSNEYQENANSNLQSLTLSMGSGKDSTCETSGENSTNTTVEVAPRRTLDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQDYKTYCFICFVTAGGYDKEEKAARAYDLAALKYWGTSTTTNFPISNYEKELDEMKHMTRQEFVAAIRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTEEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVKAILESNTLPIGGGAAKRLKEAQALESSRKREEMIALGSSSTFQYGTSASSSRLHAYPLMQHHHQFEQPQPLLTLQNHDISSSHFSHQQDPLHHQGYIQTQLQLHQQSGASSYSFQNNAQFYNGYLQNHPALLQGMMNMGSSSSSSSVLENNNSNNNNNNVGGFVGSGFGMASNATAGNTVGTAEELGLVKVDYDMPAGGYGGWSAADSMQTSNGGVFTMWND 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00500 563 PRINTS Ethylene responsive element binding protein signature 165 176 IPR001471 GO:0003700|GO:0006355
Gma12g00500 563 PRINTS Ethylene responsive element binding protein signature 222 242 IPR001471 GO:0003700|GO:0006355
Gma12g00500 563 SUPERFAMILY DNA-binding domain 275 336 IPR016177 GO:0003677
Gma12g00500 563 SUPERFAMILY DNA-binding domain 163 242 IPR016177 GO:0003677
Gma12g00500 563 SMART rav1_2 164 246 IPR001471 GO:0003700|GO:0006355
Gma12g00500 563 SMART rav1_2 276 340 IPR001471 GO:0003700|GO:0006355
Gma12g00500 563 ProSiteProfiles AP2/ERF domain profile. 276 334 IPR001471 GO:0003700|GO:0006355
Gma12g00500 563 Pfam AP2 domain 164 232 IPR001471 GO:0003700|GO:0006355
Gma12g00500 563 Pfam AP2 domain 277 326 IPR001471 GO:0003700|GO:0006355
Gma12g00500 563 Gene3D AP2/ERF domain 164 242 IPR036955 GO:0003700|GO:0006355
Gma12g00500 563 Gene3D AP2/ERF domain 276 336 IPR036955 GO:0003700|GO:0006355
Gma12g00500 563 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 4 562 - -
Gma12g00500 563 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR PLT2 4 562 - -
Gma12g00500 563 CDD AP2 163 242 IPR001471 GO:0003700|GO:0006355
Gma12g00500 563 ProSiteProfiles AP2/ERF domain profile. 164 240 IPR001471 GO:0003700|GO:0006355
Gma12g00500 563 CDD AP2 275 336 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00500 Gma-Chr12 4176821 4179725 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00500 3 563 AP2-EREBP Transcription Factor Family AT1G51190 61.322 0.0 641
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Gma12g00500 AP2 1e-05 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00500 K09285 - gmx:100788471 1067.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00500 12 4176821 4179725 Gma12g00500 12 4176821 4179725 ECH
Gma12g00500 12 4176821 4179725 Gma11g01198 11 10236734 10240115 GST