Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00498 ATGGATTCAGCAAGAACAGCTCCTCCCCCGTGGCAGGAGCTGGACTTGGACAGCCTCAAACCCCTCAAAGTCCTAGGAAAAGGCGGCATGGGTACTGTCTTCCTCGTACAGGCCGCCAACAATACCCGCTTCGCCCTCAAAGTGGTGGACAAAACGTGCGTTCACGCGAAGCTGGACGCGGAGCGGCGCGCGCGTTGGGAAATCCAAGTCCTCTCAACTCTATCCCACCCTTTCCTCCCTTCCCTCATGGGAACGTTCGAGTCCCCACAGTTCCTTGCGTGGGCCCTACCCTACTGCCCCGGCGGCGACCTCAACGTCCTCCGCTACCGCCAAACCGACCGCGCCTTCTCCCCTGCCGTCATCCGCTTCTACGTCGCCGAAATCCTCTGCGCCCTCGACCACCTCCATTCCATGGGCATAGCCTACCGCGACCTAAAACCCGAAAATGTCCTCGTCCAAAACACCGGCCACATTACCCTCACCGATTTTGACCTCTCCCGCAAACTCAATCCCAAACCTAAACCTAATCCACAAGTTCCTTCTATCCCCTTGCCCAATTCTAACGTTCCCGAACCTCGCCGGAAACACCGCCGGAATTTCTCCCGGTGGATCTCCCTCTTCCCGCCGGACGGGACTCACCATAACAACAACAAAAACGGACTCAAGAAGGCGAAGTCCGCGCGAGTCAGCCCGGTGAGTCGGAGAAAACCGAGTTTCTCCAACGGCGAACGATCCAACTCGTTCGTCGGCACGGAAGAATACGTCTCCCCGGAGGTCGTCCGCGGCGACGGACACGAGTTCGCCGTCGATTGGTGGGCGCTTGGAATACTAATCTACGAAATGCTATACGGTACGACGCCGTTTAAGGGAAAGAATCGCAAGGAAACGTTTCGGAATGTTATCACGAAGCCGCCGGTTTTTGTGGGAAAGAGAACGGCGTTGACGGATCTTATTGAGAAGCTTTTGGAGAAGGATCCGACGAAGCGGTTGGGGTACACGCGCGGTGCCGTGGAGATCAAGGAGCACGAGTTTTTCCGAGGGGTTCGGTGGGAGCTTTTGACGGAGGTGGTGCGCCCGCCGTTCATTCCGACGCGGGACGACGGCGCCGGAGATTCGACGGATAGGATTTCCGACCGGAATTGTGGCTTCGATATTAGGGGTTACTTTCTGAATCTTAAATCGTCGCCGTCGTTGCCGGGTTCGCCGTTGCCATCGCCGTCGTGCAGGTTTAAGAAGAATGTTTCGCTAACAGAATTCTAA 1260 0.5675 MDSARTAPPPWQELDLDSLKPLKVLGKGGMGTVFLVQAANNTRFALKVVDKTCVHAKLDAERRARWEIQVLSTLSHPFLPSLMGTFESPQFLAWALPYCPGGDLNVLRYRQTDRAFSPAVIRFYVAEILCALDHLHSMGIAYRDLKPENVLVQNTGHITLTDFDLSRKLNPKPKPNPQVPSIPLPNSNVPEPRRKHRRNFSRWISLFPPDGTHHNNNKNGLKKAKSARVSPVSRRKPSFSNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILIYEMLYGTTPFKGKNRKETFRNVITKPPVFVGKRTALTDLIEKLLEKDPTKRLGYTRGAVEIKEHEFFRGVRWELLTEVVRPPFIPTRDDGAGDSTDRISDRNCGFDIRGYFLNLKSSPSLPGSPLPSPSCRFKKNVSLTEF 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00498 419 MobiDBLite consensus disorder prediction 173 187 - -
Gma12g00498 419 Gene3D Phosphorylase Kinase; domain 1 20 102 - -
Gma12g00498 419 Pfam Protein kinase domain 240 345 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma12g00498 419 Pfam Protein kinase domain 22 176 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma12g00498 419 ProSitePatterns Protein kinases ATP-binding region signature. 25 47 IPR017441 GO:0005524
Gma12g00498 419 PANTHER FLIPPASE KINASE 1-RELATED 14 369 - -
Gma12g00498 419 ProSiteProfiles Protein kinase domain profile. 19 345 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma12g00498 419 SMART serkin_6 19 345 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma12g00498 419 Gene3D Transferase(Phosphotransferase) domain 1 103 172 - -
Gma12g00498 419 ProSitePatterns Serine/Threonine protein kinases active-site signature. 140 152 IPR008271 GO:0004672|GO:0006468
Gma12g00498 419 Gene3D Transferase(Phosphotransferase) domain 1 242 364 - -
Gma12g00498 419 PANTHER SERINE/THREONINE-PROTEIN KINASE UCNL 14 369 - -
Gma12g00498 419 MobiDBLite consensus disorder prediction 211 247 - -
Gma12g00498 419 SUPERFAMILY Protein kinase-like (PK-like) 17 377 IPR011009 -
Gma12g00498 419 MobiDBLite consensus disorder prediction 165 195 - -
Gma12g00498 419 MobiDBLite consensus disorder prediction 233 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00498 Gma-Chr12 4145000 4146456 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00498 14 419 AGC Kinase Gene Family AT3G20830 58.753 3.35e-159 453
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Gma12g00498 Pkinase 2.8e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00498 - K08286 gmx:100785281 846.269
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00498 12 4145000 4146456 Gma12g00498 12 4145000 4146456 ECH
Gma12g00498 12 4145000 4146456 Gma11g01197 11 10210714 10212178 GST
Gma13g03049 13 44854120 44855654 Gma12g00498 12 4145000 4146456 PCT
Gma12g00498 12 4145000 4146456 Gma13g03049 13 44854120 44855654 PCT