LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gma12g00498	ATGGATTCAGCAAGAACAGCTCCTCCCCCGTGGCAGGAGCTGGACTTGGACAGCCTCAAACCCCTCAAAGTCCTAGGAAAAGGCGGCATGGGTACTGTCTTCCTCGTACAGGCCGCCAACAATACCCGCTTCGCCCTCAAAGTGGTGGACAAAACGTGCGTTCACGCGAAGCTGGACGCGGAGCGGCGCGCGCGTTGGGAAATCCAAGTCCTCTCAACTCTATCCCACCCTTTCCTCCCTTCCCTCATGGGAACGTTCGAGTCCCCACAGTTCCTTGCGTGGGCCCTACCCTACTGCCCCGGCGGCGACCTCAACGTCCTCCGCTACCGCCAAACCGACCGCGCCTTCTCCCCTGCCGTCATCCGCTTCTACGTCGCCGAAATCCTCTGCGCCCTCGACCACCTCCATTCCATGGGCATAGCCTACCGCGACCTAAAACCCGAAAATGTCCTCGTCCAAAACACCGGCCACATTACCCTCACCGATTTTGACCTCTCCCGCAAACTCAATCCCAAACCTAAACCTAATCCACAAGTTCCTTCTATCCCCTTGCCCAATTCTAACGTTCCCGAACCTCGCCGGAAACACCGCCGGAATTTCTCCCGGTGGATCTCCCTCTTCCCGCCGGACGGGACTCACCATAACAACAACAAAAACGGACTCAAGAAGGCGAAGTCCGCGCGAGTCAGCCCGGTGAGTCGGAGAAAACCGAGTTTCTCCAACGGCGAACGATCCAACTCGTTCGTCGGCACGGAAGAATACGTCTCCCCGGAGGTCGTCCGCGGCGACGGACACGAGTTCGCCGTCGATTGGTGGGCGCTTGGAATACTAATCTACGAAATGCTATACGGTACGACGCCGTTTAAGGGAAAGAATCGCAAGGAAACGTTTCGGAATGTTATCACGAAGCCGCCGGTTTTTGTGGGAAAGAGAACGGCGTTGACGGATCTTATTGAGAAGCTTTTGGAGAAGGATCCGACGAAGCGGTTGGGGTACACGCGCGGTGCCGTGGAGATCAAGGAGCACGAGTTTTTCCGAGGGGTTCGGTGGGAGCTTTTGACGGAGGTGGTGCGCCCGCCGTTCATTCCGACGCGGGACGACGGCGCCGGAGATTCGACGGATAGGATTTCCGACCGGAATTGTGGCTTCGATATTAGGGGTTACTTTCTGAATCTTAAATCGTCGCCGTCGTTGCCGGGTTCGCCGTTGCCATCGCCGTCGTGCAGGTTTAAGAAGAATGTTTCGCTAACAGAATTCTAA	1260	0.5675	MDSARTAPPPWQELDLDSLKPLKVLGKGGMGTVFLVQAANNTRFALKVVDKTCVHAKLDAERRARWEIQVLSTLSHPFLPSLMGTFESPQFLAWALPYCPGGDLNVLRYRQTDRAFSPAVIRFYVAEILCALDHLHSMGIAYRDLKPENVLVQNTGHITLTDFDLSRKLNPKPKPNPQVPSIPLPNSNVPEPRRKHRRNFSRWISLFPPDGTHHNNNKNGLKKAKSARVSPVSRRKPSFSNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILIYEMLYGTTPFKGKNRKETFRNVITKPPVFVGKRTALTDLIEKLLEKDPTKRLGYTRGAVEIKEHEFFRGVRWELLTEVVRPPFIPTRDDGAGDSTDRISDRNCGFDIRGYFLNLKSSPSLPGSPLPSPSCRFKKNVSLTEF	419

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Gma12g00498	419	MobiDBLite	consensus disorder prediction	173	187	-	-
Gma12g00498	419	Gene3D	Phosphorylase Kinase; domain 1	20	102	-	-
Gma12g00498	419	Pfam	Protein kinase domain	240	345	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Gma12g00498	419	Pfam	Protein kinase domain	22	176	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Gma12g00498	419	ProSitePatterns	Protein kinases ATP-binding region signature.	25	47	IPR017441	GO:0005524
Gma12g00498	419	PANTHER	FLIPPASE KINASE 1-RELATED	14	369	-	-
Gma12g00498	419	ProSiteProfiles	Protein kinase domain profile.	19	345	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Gma12g00498	419	SMART	serkin_6	19	345	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Gma12g00498	419	Gene3D	Transferase(Phosphotransferase) domain 1	103	172	-	-
Gma12g00498	419	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	140	152	IPR008271	GO:0004672\|GO:0006468

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Gma12g00498	Gma-Chr12	4145000	4146456	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gma12g00498	14	419	AGC Kinase Gene Family	AT3G20830	58.753	3.35e-159	453

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	AGC_RSK-2	Gma12g00498		Pkinase	2.8e-34	CL0016

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gma12g00498	-		K08286	gmx:100785281	846.269

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Event-related genes

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Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
Gma12g00498	12	4145000	4146456	Gma12g00498	12	4145000	4146456	ECH
Gma12g00498	12	4145000	4146456	Gma11g01197	11	10210714	10212178	GST
Gma13g03049	13	44854120	44855654	Gma12g00498	12	4145000	4146456	PCT
Gma12g00498	12	4145000	4146456	Gma13g03049	13	44854120	44855654	PCT

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