Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00492 ATGGAGTCAGATCTTCGGCAGCACCCTCCCATGTTTTTGGATCACCACCACCAGCAGCAGCAGATGAATTCTGGGTTGACACGGTACCGATCGGCGCCAAGTTCGTATTTTTCGAGCATCATTGACCGTGAGTTCTACGAACACGTTTTCAATCGACCCTCTAGCCCAGAAACAGAGCGAATGTTGACACGCTTTGTGGATAGTCTTGGTGGAGGTGATGCTGCTGATGCTGATGCAGAGGACTCACTTGCTAATACTCAGAATCCCCCAACAACTGTTGTTGCGGTTAAGGAAGAGGTTAATCATCAACCTCAGGATGTGACATCCATGAATAATGAACCACTTGTTCTCCAACAACAACAGCAGCAACAAAGTAATAATATGAATAATTATGGCTCTTCTGGTACTCAGAATTTTTACCAAAGCACTGGACGACCACCTTTGCCAAACCAGATGAAAACTGGTCGTGGAAGTAGTTCCAGTCTTATCAGACATGGTAGCTCACCTGCTGGATTGTTTTCAAACATTAACATTGATACTGGCTATGCTGCTGTTAGAGGCATGGGAACTATGGGAGCTGCTGCTGCTAATAACACCACCGAGGAAGCAAACTTTTCACCCGCAACAAGAATGAAGAATGCAAcaaagttctcttcaggactaatgtcatcaaggcctggaattggaaacaagagcaacacacagaacaatgcagaaaatgaagggtttgctgaaagccagggcaatgaatttatccctgcaggtttccccgttggtccgtgggatgattctgcaatcatgtctgacaatatgacaggtctgaagagatttagagatgaagatgtgaaaccattttctggtttaaatgcacctgaaagtcagaatgaaactggaggccAACAACCTTCTTCTTCTGCTTTGGCTCATCAATTGAGTTTGCCAAACACTTCTGCAGAAATGGCAGCCATTGAGAAGTTTCTTCAGCTCTCGGATTCTGTTCCTTGCAAAATTCGTGCCAAGCGGGGCTGTGCCACTCACCCTAGAAGCATTGCAGAGAGGGTTAGAAGAACTAAAATTAGTGAGCGAATGAGGAAGCTACAAGATCTGGTCCCCAACATGGATAAGCAAACAAACACAGCAGACATGTTGGACTTGGCTGTTGAGTACATTAAAGACCTTCAAAACCAAGTTGAGGCACTTTCGGACAATCGGGCAAAGTGTACGTGTTTACACAAGAAGCAGCAATAA 1248 0.3598 MESDLRQHPPMFLDHHHQQQQMNSGLTRYRSAPSSYFSSIIDREFYEHVFNRPSSPETERMLTRFVDSLGGGDAADADAEDSLANTQNPPTTVVAVKEEVNHQPQDVTSMNNEPLVLQQQQQQQSNNMNNYGSSGTQNFYQSTGRPPLPNQMKTGRGSSSSLIRHGSSPAGLFSNINIDTGYAAVRGMGTMGAAAANNTTEEANFSPATRMKNATKFSSGLMSSRPGIGNKSNTQNNAENEGFAESQGNEFIPAGFPVGPWDDSAIMSDNMTGLKRFRDEDVKPFSGLNAPESQNETGGQQPSSSALAHQLSLPNTSAEMAAIEKFLQLSDSVPCKIRAKRGCATHPRSIAERVRRTKISERMRKLQDLVPNMDKQTNTADMLDLAVEYIKDLQNQVEALSDNRAKCTCLHKKQQ 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00492 415 Pfam Helix-loop-helix DNA-binding domain 348 394 IPR011598 GO:0046983
Gma12g00492 415 MobiDBLite consensus disorder prediction 288 308 - -
Gma12g00492 415 MobiDBLite consensus disorder prediction 219 241 - -
Gma12g00492 415 MobiDBLite consensus disorder prediction 283 308 - -
Gma12g00492 415 Gene3D - 344 414 IPR036638 GO:0046983
Gma12g00492 415 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 343 393 IPR011598 GO:0046983
Gma12g00492 415 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 16 412 - -
Gma12g00492 415 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 346 406 IPR036638 GO:0046983
Gma12g00492 415 SMART finulus 349 399 IPR011598 GO:0046983
Gma12g00492 415 Coils Coil 383 410 - -
Gma12g00492 415 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 16 412 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00492 Gma-Chr12 4087312 4092196 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00492 1 409 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G51140 41.766 4.63e-82 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gma12g00492 HLH 4.1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00492 - - gmx:100803833 768.074
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00492 12 4087312 4092196 Gma12g00492 12 4087312 4092196 ECH
Gma11g01191 11 10138137 10142740 Gma12g00492 12 4087312 4092196 ECH
Gma03g01302 03 39201065 39204811 Gma12g00492 12 4087312 4092196 ECH
Gma19g01359 19 42912228 42915776 Gma12g00492 12 4087312 4092196 ECH
Gma10g00858 10 13400181 13403280 Gma12g00492 12 4087312 4092196 ECH
Gma12g00492 12 4087312 4092196 Gma11g01191 11 10138137 10142740 GST