Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00488 ATGTCGACCACAACTGTATCCGGCGGCGACCCTCCTTCTCGCGGTTTTGATACGCCGACGCTGGACCGGGAGGCGGCGGCGCTGCTCCACGCGATCTCCGAGCATGGCGGGTACGCGTACGTGAGCATGGCGGTGCTGGCTTCCGGCGGCGACATTCGCGCGGCGGAGGCGGCTCGGGAGATGGCGTGGGAGCAGCTGCACTCGGGTCCGTGGCACTCGGTGCTGCCGGTGTGGCGCGACGCCTACTCCATGGCGTGCCTCCACGTGGCGCGCCACCACTACGGCAACGGTGAGTTCTTGGACGCACTTAGGGTTTTGGATTTGGGAATCATCATGGGAGGCACGCTCCTCCGCAAGGATTTGGACTCCGCCATCGAGAAAGTGTCGGAACaaacacggaggagcgttagggtttctgatttggggaactccgaacaccgactcgtcgatcgcgaatttgatatggcagagGTGCTCCAACTTTTACCTGTGAAGTCTCTTTCTACGAAACTTGTGGTGAAGAAATCGGCGCTGTCCTTGGAGAAATTCCTGAAGGATCATTACCTGTCTGGCTGCCCGGTTATTATCAGTGATTGTATGTCTCACTGGCCAGCCAAGATGAAATGGAATGACGAAGATTACTTGCTGAGAGTTGCCGGAGACCGTACAGTTCCAGTTGAGGTTGGGAAAAACTATTTATGTACTGAGTGGAAGCAAGAGCTAATTACTTTTTCAGAGTTTCTTCAGCGGATAAAGTCTGATAGCTGTTCTCCTGGTGGTCCTACATATCTTGCTCAGCATCCATTATTTGATCAGataaatgagcttcggaaagatatctttattcctgactattgttttactggtggaggggagctacgatctctcaatgcttggtttggtccagcaggaaCAGTAACACCGTTACACCATGATCCACATCATAACATACTAGCTCAGGTTGTTGGAAAGAAATACATTAGGCTATACTCTTCGTCTTTATCTGAGGAACTTTCCCCCCACTCTGGTACCATGCTCCACAACTCCAGCCAGGTTGATTTAGATGATATGGATGAAAAGAAGTTTCCGAAGGTGCAAGACTTGGAATTTGTAGACTGTATTTTAGAGGAAGGCGAAATGTTATATATCCCGCCAAAATGGTGGCACTATGTGCGGTCTTTGACTACCAGTTTTTCGGTTAGCTTTTGGTGGAGTGAGGGTGAAAGTTCGGATGCATCCTAA 1242 0.4412 MSTTTVSGGDPPSRGFDTPTLDREAAALLHAISEHGGYAYVSMAVLASGGDIRAAEAAREMAWEQLHSGPWHSVLPVWRDAYSMACLHVARHHYGNGEFLDALRVLDLGIIMGGTLLRKDLDSAIEKVSEQTRRSVRVSDLGNSEHRLVDREFDMAEVLQLLPVKSLSTKLVVKKSALSLEKFLKDHYLSGCPVIISDCMSHWPAKMKWNDEDYLLRVAGDRTVPVEVGKNYLCTEWKQELITFSEFLQRIKSDSCSPGGPTYLAQHPLFDQINELRKDIFIPDYCFTGGGELRSLNAWFGPAGTVTPLHHDPHHNILAQVVGKKYIRLYSSSLSEELSPHSGTMLHNSSQVDLDDMDEKKFPKVQDLEFVDCILEEGEMLYIPPKWWHYVRSLTTSFSVSFWWSEGESSDAS 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00488 413 ProSiteProfiles JmjC domain profile. 271 413 IPR003347 -
Gma12g00488 413 Gene3D Cupin 171 405 - -
Gma12g00488 413 PANTHER HYPOXIA-INDUCIBLE FACTOR 1 ALPHA INHIBITOR-RELATED 36 406 - -
Gma12g00488 413 SUPERFAMILY Clavaminate synthase-like 177 405 - -
Gma12g00488 413 PANTHER - 36 406 - -
Gma12g00488 413 SMART cupin_9 262 412 IPR003347 -
Gma12g00488 413 Pfam Cupin-like domain 182 406 IPR041667 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00488 Gma-Chr12 4056047 4059806 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00488 166 404 Acyl Lipid Metabolism Gene Families AT3G45880 25.676 5.56e-12 64.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Gma12g00488 Cupin_8 2.6e-46 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00488 K24444 - gmx:100813075 817.764
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00488 12 4056047 4059806 Gma12g00488 12 4056047 4059806 ECH
Gma12g00488 12 4056047 4059806 Gma11g01186 11 10093093 10096658 GST