Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00485 ATGAGAAACCATAGTGTGAATGCAATGAATATAGCGGGCCAACTTGTGTCAAGTGCCGACACCGAATCTTTGCAAAATGACATGACACATTATTTTGTTAGCTTAAATCAAGTTGAAACTTTGGAATTTGATAAGATAATAATTTCTGGTTCATTTCCATTAAAATATGGAAGAACTTACAGATCATTGACTTCAACTTGCATAGACTGTGAAACAGAAGTAATGGATGCAAGTGACCTTGAAAAGGATTTGTTCAGCAAAGTAGAGACAAATGACTACTACACCACTGTTTTAAAGATTAAAGGGCTAGAACATTTGCCTGTTGGATTCTATTATTTTAGTGAATATATGGAAGATCCTAGCACAATGGGACATCCAGTTGCAATGCAGAGATTTTATTCTGACACTAATATATTCTTATTATGGTCCTACGGCAACTCTGTTGATATTAAGGAACCGACAGTCATGGAGCTTGTAATCAAGACAATAGAAGCCATTGGGGGAGAGGTTGAGCATGTCATTCTTCAGCGTCGCTTTATGTATTTTCCTCATGTTGGCAGCCAAGATATGAAAGATGGTTTTTATGAAAAGTTGGAATCTGAGCTTCAAGGTTCAAGGAATACTTATTATGTAGGCGGACTTATGGCATTTGAGCTCACAGAGAGAAATTCATCTTATGCCATGGCTTTGATCTGCAAGAACTTTGCATATAGGAATGATTTTCCAATATTTCCTTACACCAAGAATTTGTTTCCCTTGCAAGCTTTGTGCCAGAAAAAGAATCGTAGAGAATTAGGTGAATTGCCAGAAGTGCAATTTCCTAATTTGCCTACTTTGAATAGCTACTTAACGCACTGGGGAACTCATCCAATCACTCAAAACAGGGCTCTTTATACTTGGATTAATGAAGAAGGGACTCCAGTATGCCAAAGGACCTATGGAGAACTATATTTTAATTCTTCTTGCATTGCTCATAAGCTCCTAACAAGCCAAAAGCCAGTTATCAAGCCCGGTGACAAGGTTCTCCTGATCTATGTCCCTGGTTTGGATTTTATTGATGCCTTCTTTGGATGCCTAAGAGCTAAAGTCATACCAGTCCCCATTCTTCCTCCAGATCCCATGCAAAGAAATGGACAAGCACTAATTCAAATTGAAAACGTTGCCAAGTCATGTAACATTGTGGCAATTTTATCAACTGTAGCTTATCACTCAGCAGTCCGTGCAGGTTCGTTGAAAAATTTAATCTCATTAACTGAAAAAAATGGGAAATCCTCAGCTCGGTGGCCGAATCTTCCATGGTTGCACACTGGTACATGGGTCAAGAACTCCAAAAGTATGATTCTGGAACATCTTGACAAACAATGTGAACCTCAGCCAGGTGATATATGTTTCTTGCAATTTACCTCAGGTTCAACTAGTGATGCCAAAGGAGTCATGATTACTCATGGTGGGCTAATTCACAATGTAAAGTTCATGCGAACAAGATACAAGAGCACCTCAAGGACAACGCTAGTAAGCTGGCTCCCTCAGTATCATGACATGGGGCTGATTGGGGGACTTTTTACATCTCTTGTTAGTGGTGGATCTGCAGTTTTATTTTCACCGATGACATTTATCAAGAAACCACTCTTATGGCTTGAAACTATTAGCAAGTATCAAGCAACTCATAGCGCTGGACCCAACTTTGCCTTTGAGTTACTGATTCGAAGATTGGAGTCTGACAAGGATAAGCTTCAGAATTTAGACCTCTCATCCTTGACTTTTCTTATGGTTGCTGCTGAACCAGTGAGACAGAAGACCATGAAAAGATTTATTGAGCTAACCAGTCCTTTTGGCTTATCTGAAAAGGTGATGGCTCCTGGATATGGCTTAGCAGAAAATTGTGTGTTTGTCAGCTGTGCATTTGGAGAAGGCATAGGATACTGGGGAAGGGAAGAATTGAGTCAAAAAACTTTCAGGAATGAACTTCATAATCATCCTGGACGTAGCTACACAAGAACTGGAGACTTGGGACGAATAATAGATCAGAAGTTATTCATCACTGGAAGGATCAAGGATCTTATCATTGTTGCTGGAAGAAATATTTACTCGGCAGATGTTGAAAAGACAGTTGAGACTTCATCAGAATTTCTTCGTCCTGGTTGCTGTGCTGTCATTGGAGTCCCTGAGGAAATTTTATCAGCAAAGGGGATTTCCACTCCAGATGGCTCTGATCAGGTTGGCTTGGTTGTGATTGCAGAAGTAAGGGATGGAAAGCCAGTCAGCAAAGATTTGATTGAGAAAATTAAGACTCGTGTGGTAGAAGAGCATGGAGTCAATGTTGCTTCTGTCAAGTTGATCAAGCCTAGAACCATCAGCAAAACAACATCAGGAAAAATCAAGAGATTTGAATGTGTCGAACAGTTCACAGATGAAACACTGAACTTGGTACCACAAGGTTCAAAAACTATTTTGACAAAGAAGTCTTTGTTAAGGCCATTCACTACAGGAGCATGGGGAGAAGAAAAAAGACCAGGGCAACAGCAAACGGGAATCCCAATCAACGACATCTCAGTCACAGACAACCTGACATCCTATGGAATTGACTCAATTGGTGTGGTTAAAGCAACTCAAAAACTGTCAGATTTCTTAGGAACTCCAGTTGCAGCTATAGATGTTTTCACTGCATCCTGCATTCTAGAATTGGTTAACTTCTCTAAGGATCTCCTATCAAAGTCTCAGCCTCAACTTTCAAGCAATCTGCCCAACATTCCAGAAGCTGAGAGTGATTCTACTGAATTCATTGTGGAGGTATCCAAGTCTCGCCAATTTGGTATCCATGTACTTCAACTCCTGGCACTCATTTATGTTTCTATCATGCTGGTATCTCCTGCATATCTATCTATTACTAGTTATCTAAATTTCATCCTAAGTGCCAGTAAATGGATAGATGGATTTCCCTGGTTAAATTACTTAATTTCCCTGACTTTTGCACCTCTTGCTTGGATTCTTTGTATTGCTTCTACTTGCATTTGCATTTCATTATTTGGAAGCTCTTTCTTGGTGCCAAACTATGCCCTTACCTCTGAAATCTCCATCTACTCAATGGATTTTGTTAAGTGGTGGGCACTATATAAGGCCCAAGAAATTTCTTCTAAAATTCTGGCTATACACCTCAGAGGAACAGTGCTTCTAAATTACTGGTTTGAGATGCTGGGTGCAAGGATTGGATCCTCAGTTTTACTTGATACAGTTGACATCACTGAACCATTTATGGTGTCAATTGAAGATGAAATTGTCATTTCTGAAGGTGTTTTGGTTCAAAGCCACGAGGTAAAGAATGGAATTTTAAGTTTCCATCCTATTAGGATTGGCAAATGTTCTTCCATTGGACCTTATGCTGTTATCCAAAAAGGAAGTGTTATTGGAGAAGGTGTTGAGGTACAGGCCATGCGGAAGGTTGGACAAGACCAACATGTGTTCAAACCTGCAAAGCTTAATAATGATAACAAGAAATGTTATGTACAAAATGCAGAACTACTCATTACCAGCAAAACTCAATATGATATTATCTACCACTTTATGGGAATCTATCTTGTTGGCTTTCTCAGCTCCCTTGCTGCAGTCATTGCCTACTTCTTATATATTTGGTTCTCCAAGCAACCTCCATCACCCCAACACTTCACCTTTATTTGCATATGTGGGGCCTTCCGTTGGATACCCTTTACAATCATTGCATATGCTACCATGTTTTCTGAAGTCTCATCAAACCCCATCATCTTTGCCATTTCATTTACCAGCGCCTACTTGCTTCATGGTTTCATACTCATCATTCTCACCACTGCTTTTACTCGTCTCCTCAAAACTTGTCAAAAGAAAACCCAATTTAAAACCCAGCTTCGATGCCAAATGATAACTTCCTGCCACCTTAGATGTGCAAAACTTCTCTCAGGAACAGAAGCCTTCTGCATATATCTACGCCTTTTGGGTGCAAAAATTGGCAAGCATTGTTCCATTAGAGCCATCAACCCAGTTTCAAATCCAGAGTTCATGTCTATTGGTGATGGTGTCCATCTTGGAGATTTTAGCTGTGTAATTACAGGCTTTCATTCTTCAAGTGGATATGTTAGTGGAAAAGTTGAGGTTCAGGACAATTCGGTTATTGGTAGTCAAAGTCTAATCCTCCCTGGTTCTCTAGTCCAAAAGAATGTGTTCTTGGTGCACTTTCAGTTGCTCCAATGA 4221 0.3987 MRNHSVNAMNIAGQLVSSADTESLQNDMTHYFVSLNQVETLEFDKIIISGSFPLKYGRTYRSLTSTCIDCETEVMDASDLEKDLFSKVETNDYYTTVLKIKGLEHLPVGFYYFSEYMEDPSTMGHPVAMQRFYSDTNIFLLWSYGNSVDIKEPTVMELVIKTIEAIGGEVEHVILQRRFMYFPHVGSQDMKDGFYEKLESELQGSRNTYYVGGLMAFELTERNSSYAMALICKNFAYRNDFPIFPYTKNLFPLQALCQKKNRRELGELPEVQFPNLPTLNSYLTHWGTHPITQNRALYTWINEEGTPVCQRTYGELYFNSSCIAHKLLTSQKPVIKPGDKVLLIYVPGLDFIDAFFGCLRAKVIPVPILPPDPMQRNGQALIQIENVAKSCNIVAILSTVAYHSAVRAGSLKNLISLTEKNGKSSARWPNLPWLHTGTWVKNSKSMILEHLDKQCEPQPGDICFLQFTSGSTSDAKGVMITHGGLIHNVKFMRTRYKSTSRTTLVSWLPQYHDMGLIGGLFTSLVSGGSAVLFSPMTFIKKPLLWLETISKYQATHSAGPNFAFELLIRRLESDKDKLQNLDLSSLTFLMVAAEPVRQKTMKRFIELTSPFGLSEKVMAPGYGLAENCVFVSCAFGEGIGYWGREELSQKTFRNELHNHPGRSYTRTGDLGRIIDQKLFITGRIKDLIIVAGRNIYSADVEKTVETSSEFLRPGCCAVIGVPEEILSAKGISTPDGSDQVGLVVIAEVRDGKPVSKDLIEKIKTRVVEEHGVNVASVKLIKPRTISKTTSGKIKRFECVEQFTDETLNLVPQGSKTILTKKSLLRPFTTGAWGEEKRPGQQQTGIPINDISVTDNLTSYGIDSIGVVKATQKLSDFLGTPVAAIDVFTASCILELVNFSKDLLSKSQPQLSSNLPNIPEAESDSTEFIVEVSKSRQFGIHVLQLLALIYVSIMLVSPAYLSITSYLNFILSASKWIDGFPWLNYLISLTFAPLAWILCIASTCICISLFGSSFLVPNYALTSEISIYSMDFVKWWALYKAQEISSKILAIHLRGTVLLNYWFEMLGARIGSSVLLDTVDITEPFMVSIEDEIVISEGVLVQSHEVKNGILSFHPIRIGKCSSIGPYAVIQKGSVIGEGVEVQAMRKVGQDQHVFKPAKLNNDNKKCYVQNAELLITSKTQYDIIYHFMGIYLVGFLSSLAAVIAYFLYIWFSKQPPSPQHFTFICICGAFRWIPFTIIAYATMFSEVSSNPIIFAISFTSAYLLHGFILIILTTAFTRLLKTCQKKTQFKTQLRCQMITSCHLRCAKLLSGTEAFCIYLRLLGAKIGKHCSIRAINPVSNPEFMSIGDGVHLGDFSCVITGFHSSSGYVSGKVEVQDNSVIGSQSLILPGSLVQKNVFLVHFQLLQ 1406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00485 1406 SUPERFAMILY Trimeric LpxA-like enzymes 1053 1153 IPR011004 -
Gma12g00485 1406 SUPERFAMILY Trimeric LpxA-like enzymes 1321 1398 IPR011004 -
Gma12g00485 1406 PANTHER AMP-BINDING ENZYME 36 638 - -
Gma12g00485 1406 Pfam AMP-binding enzyme 640 690 IPR000873 -
Gma12g00485 1406 Pfam AMP-binding enzyme 309 633 IPR000873 -
Gma12g00485 1406 Pfam Phosphopantetheine attachment site 841 898 IPR009081 -
Gma12g00485 1406 Gene3D - 265 684 IPR042099 -
Gma12g00485 1406 Gene3D - 685 813 IPR045851 -
Gma12g00485 1406 PANTHER AMP-BINDING ENZYME 638 1399 - -
Gma12g00485 1406 Gene3D Hexapeptide repeat proteins 1272 1400 - -
Gma12g00485 1406 PANTHER AMINE OXIDASE 638 1399 - -
Gma12g00485 1406 ProSitePatterns Putative AMP-binding domain signature. 465 476 IPR020845 -
Gma12g00485 1406 Gene3D - 839 900 IPR036736 -
Gma12g00485 1406 CDD FAAL 285 804 IPR040097 GO:0008610
Gma12g00485 1406 Gene3D - 171 236 IPR036188 -
Gma12g00485 1406 Gene3D Hexapeptide repeat proteins 1066 1182 - -
Gma12g00485 1406 ProSitePatterns Phosphopantetheine attachment site. 858 873 IPR006162 -
Gma12g00485 1406 SUPERFAMILY Acetyl-CoA synthetase-like 278 809 - -
Gma12g00485 1406 PANTHER AMINE OXIDASE 36 638 - -
Gma12g00485 1406 SUPERFAMILY ACP-like 841 908 IPR036736 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00485 Gma-Chr12 4042853 4048391 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00485 272 545 Acyl Lipid Metabolism Gene Families AT5G27600 26.000 8.69e-09 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00485 - - gsj:114374875 2078.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00485 12 4042853 4048391 Gma11g01185 11 10086859 10089189 GST
Gma13g03060 13 44951213 44959077 Gma12g00485 12 4042853 4048391 PCT
Gma15g00300 15 2617888 2625744 Gma12g00485 12 4042853 4048391 PCT
Gma12g00485 12 4042853 4048391 Gma13g03060 13 44951213 44959077 PCT
Gma12g00485 12 4042853 4048391 Gma15g00300 15 2617888 2625744 PCT