Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00480 ATGGAGTCGGAGGATGATATGCCCGACGCCAACGACATCGAGTCCCTCGACGACGATTTCTACAGTGGCGAGACCGAGGACGCTCCCTTGGACTACTACAGCGACTACGACGCCGACGATTACTTCGACGACGCCGAGAGGATCGAGTCTCGCCGCCCTGAGCAAAATTTTACCATATTGAAGGAATCCGATATACGACTAAGACAGGAAGATGACGTCACTAGAGTAGCAACGGTTCTTTCCATATCAAGGGTTTTTGCAAGCATACTACTCCGTCACCACAATTGGAGCGTCAGTAGAGTGCACGATGCATGGTTTGCTGATGAAGAACGAGTCCGAAAAGCAGTTGGTTTGTTGGAGAAGCCAATTGTCCAGCATCCTAATACTAGAGAGCTTACTTGCGGTATCTGTTTTGAAAATTATCCTCGTGCTAGGATTGAAATGGCTTCCTGTGGGCATCCCTATTGTATCTCATGTTGGGAAGGCTATATCAGCACATCCATTAATGATGGTCCTGGATGTTTGATGTTGAGATGTCCTGATCCCACTTGTGATGCTGCTATTGGTCAAGATATGATTAATCTTCTAGTGTCGGATGAAGATAAGCAGAAATATGCACGTTACCTACTTAGATCTTATATTGAAGACAATAAGAAGTCCAAGTGGTGTCCTGCTCCAGGTTGTGAATATGCAGTTACTTTTGATGCTGGTAGTACTGGAAATTATGATGTCTCTTGCCTCTGTTCATATGGCTTTTGTTGGAATTGCACTGAGGAGGCTCATCGCCCAGTGGACTGTGGCACTGTGGCAAAGTGGATTTTGAAGAACAGTGCAGAGTCTGAAAACATGAACTGGATACTTGCTAACTCAAAGCCATGTCCCAAGTGTAAGCGACCAATTGAAAAAAATCATGGGTGCATGCACATGACATGCACTCCACCCTGTAAATTTGAATTTTGCTGGCTATGCGTTGGTGCATGGTCAGACCATGGTGAAAGAACTGGTGGTTTTTATGCTTGCAATCGTTATGAAGCAGCTAAACAAGAAGGAGTGTATGATGATACTGAAAGAAGAAGGGAAATGGCAAAGAATTCGCTGGAGAGATACACACATTATTATGAGCGGTGGGCCAGCAATCAATCTTCAAGGCAAAAAGCTCTTGCAGATCTACAGCAGatgcaaactgttcatATTGAGAAGCTTAGTGACATACAGTGTCAGCCTGAGTCACAGCTTAAGTTCATAACTGAAGCCTGGCTACAAATAATTGAGTGTAGAAGAGTGCTGAAATGGACATATGCATATGGGTTCTATTTGCCGGAGCATGAGCATGCAAAAAAGCAGTTCTTTGAGTACTTACAAGGTGAAGCAGAATCTGGTCTGGAGAGACTTCATCAATGCGCGGAAAAGGAACTACAGCCATTCTTAAGTGCTGATGATTCATCTAGAGAATTCAATGACTTTCGTACAAAGCTAGCTGGATTGACTAGTGTGACTAGAAACTACTTTGAGAATTTAGTAAGGGCATTAGAGAATGGTCTATCTGATGTGGGTAGTAATGGAGCTGCCTTCAGCAAAGCAACGAGCTCAAAAAATGCTGCTGGGAGCAGTAAGGGGAGATCTGGAAGAGGAAAGGGAACTTTTCGAAGCAGCACGCCCAGCAAAATGAATGATGATAGTCATTGGTGTTGCGAGCATTCACTTGTCTCCTGCCGAAGGCCTTTGCACCAAAAGCTGAGATGGAGACAAGATATATTATGCAGTCTCCAATTTTGTGATGCTAAATACAATAGGATGAAAGGAGTAAGGCTTGGAAGAAAGGCATTTGTAACTCAATACCATAACACAACAGATGCTGGATAA 1863 0.4359 MESEDDMPDANDIESLDDDFYSGETEDAPLDYYSDYDADDYFDDAERIESRRPEQNFTILKESDIRLRQEDDVTRVATVLSISRVFASILLRHHNWSVSRVHDAWFADEERVRKAVGLLEKPIVQHPNTRELTCGICFENYPRARIEMASCGHPYCISCWEGYISTSINDGPGCLMLRCPDPTCDAAIGQDMINLLVSDEDKQKYARYLLRSYIEDNKKSKWCPAPGCEYAVTFDAGSTGNYDVSCLCSYGFCWNCTEEAHRPVDCGTVAKWILKNSAESENMNWILANSKPCPKCKRPIEKNHGCMHMTCTPPCKFEFCWLCVGAWSDHGERTGGFYACNRYEAAKQEGVYDDTERRREMAKNSLERYTHYYERWASNQSSRQKALADLQQMQTVHIEKLSDIQCQPESQLKFITEAWLQIIECRRVLKWTYAYGFYLPEHEHAKKQFFEYLQGEAESGLERLHQCAEKELQPFLSADDSSREFNDFRTKLAGLTSVTRNYFENLVRALENGLSDVGSNGAAFSKATSSKNAAGSSKGRSGRGKGTFRSSTPSKMNDDSHWCCEHSLVSCRRPLHQKLRWRQDILCSLQFCDAKYNRMKGVRLGRKAFVTQYHNTTDAG 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00480 620 SUPERFAMILY RING/U-box 204 273 - -
Gma12g00480 620 SUPERFAMILY RING/U-box 285 333 - -
Gma12g00480 620 CDD RING-HC_RBR_TRIAD1_like 134 184 - -
Gma12g00480 620 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 128 216 IPR013083 -
Gma12g00480 620 ProSiteProfiles Zinc finger RING-type profile. 134 178 IPR001841 -
Gma12g00480 620 MobiDBLite consensus disorder prediction 528 558 - -
Gma12g00480 620 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 15 535 - -
Gma12g00480 620 Pfam Ariadne domain 353 514 IPR045840 -
Gma12g00480 620 Gene3D - 262 517 - -
Gma12g00480 620 MobiDBLite consensus disorder prediction 1 31 - -
Gma12g00480 620 SMART ibrneu5 270 340 IPR002867 -
Gma12g00480 620 SMART ibrneu5 203 266 IPR002867 -
Gma12g00480 620 MobiDBLite consensus disorder prediction 528 559 - -
Gma12g00480 620 SUPERFAMILY RING/U-box 129 215 - -
Gma12g00480 620 ProSiteProfiles TRIAD supradomain profile. 130 344 IPR044066 -
Gma12g00480 620 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 15 535 IPR031127 GO:0004842|GO:0016567
Gma12g00480 620 Pfam IBR domain, a half RING-finger domain 203 266 IPR002867 -
Gma12g00480 620 Pfam IBR domain, a half RING-finger domain 283 331 IPR002867 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00480 Gma-Chr12 3906571 3914025 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00480 17 539 ARIADNE family AT1G65430 72.233 0.0 814
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00480 K11968 - gmx:100795162 1149.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00480 12 3906571 3914025 Gma12g00480 12 3906571 3914025 ECH
Gma12g00480 12 3906571 3914025 Gma11g01178 11 9923763 9931868 GST
Gma13g03065 13 45011289 45020024 Gma12g00480 12 3906571 3914025 PCT
Gma15g00296 15 2556925 2564258 Gma12g00480 12 3906571 3914025 PCT
Gma12g00480 12 3906571 3914025 Gma13g03065 13 45011289 45020024 PCT
Gma12g00480 12 3906571 3914025 Gma15g00296 15 2556925 2564258 PCT