Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00479 ATGGGAAGCTGCATATCAACGCAAGGCGTGAGAACACGCAAGAGGTCGAGGAGCAAGAATTACAAGCCCTCCACGCCAAGAGGGCACGAGCCGGCGCGAAGGTCGAGCGTGACGGCGCGTCCGCTGAACGTGGTGTCGGGGCCGAGTCCTGGGAACATATTCGACAAGTACCAGTTCGGGAAGGAGCTGGGGCGCGGCGAGTTTGGCGTGACGCACCGCATCGTCGACGTGGAGAGCGGGGAGGCGTTTGCGTGCAAAACGATAGCGAAGACGAAGCTGAGGACGGAGATTGacgtgcaggacgtgaggagggaggtgcagatcatgcgccacttgcctcagcaccccaacatcgttgcattcaaggaagcttatgaggacaaagacgctgtttacctcgtcatggagttgtgtgaaggtggtgaattgtttgataggattgttgctaagggacattacaccgaacgtgctgctgctgatgttgccaAAACCATACTTGAAGTTTGCAAGGTGTGTCATGAGCACggagttatacacagggacttgaaacctgaaaatttcttatttgcagattcaagcgagactgctccattgaagtcaattgattttggcctttCCACCTTCTATGTGTCTGGGGAAAGATTCAGTGAAATTGTTGGAAGTCCCTATTACATGGCTCCTGAGGTTTTAAGACGTAACTACGGACCAGAAATTGATGTCTGGAGCGCAGGAGTTATTCTTTATATTTTACTTTGTGGAGTTCCACCCTTTTGGGCAGAATCTGAGGAAGGGATTGCACAAGCGATCATCAGGGGCAAAGTAGATTTCACAAGAGATCCTTGGCCTAAAGTTTCTGATGAAGCAAAACATCTAGTCAAGCGCATGCTTGATCCAAATCCATTCACCCGGATAACAGTTCAAGAAGTTCTTGATAATTCCTGGATACAAAATAGGGAGCATGGTCGAACTATTTCTCTTGGAGACCAAGTAAGAATGAGGATCAAGCAATTCTCCTTGATGAACAGATTCAAAAGGAAGGTTCTTAGAGTGGTGGCCGATAACCTGTCAGATGAGCAAGTTGATGTGTTTAAGCAAATGTTTGATATGATGGATAAGGACAAGAATGGAAACTTGTCATTTGAAGAGCTCAGAGATGGCCTTTCAATGATTGGACACGCCATTCCTGACCCTGATGTCCAAATGTTAATGGATGCTGCAGATATTGATGGAAACGGCACCCTCAACTATGATGAGTTCATCACAATGAGTGTTCATCTGAGAAAGATAGAAAGTGACGAGCATCTCTCTGAAGCGTTCCGTTACTTTGACAAGAACCAGAGCGGATATGTTGAGTTTGAGGAGTTGAAAGATGCCTTATCAGATGATGACTTGGAAGCCAGTGACGACCAAGTGGTCAAAGACATTCTAAATGATGTTGATTTGGATAAGGACGGTCGAATCAGTTTTGAGGAGTTTAAGGCAATGATGAAGACAGGAGGAGATTGGAAATTGGCCTCTCGCCAATATTCAAGAGCATTGTTGAATGCATTAAGCTTCAAGATGTTCAAAGACACATCTAGCAATTCTGTTAAGTGTAACTAA 1602 0.377 MGSCISTQGVRTRKRSRSKNYKPSTPRGHEPARRSSVTARPLNVVSGPSPGNIFDKYQFGKELGRGEFGVTHRIVDVESGEAFACKTIAKTKLRTEIDVQDVRREVQIMRHLPQHPNIVAFKEAYEDKDAVYLVMELCEGGELFDRIVAKGHYTERAAADVAKTILEVCKVCHEHGVIHRDLKPENFLFADSSETAPLKSIDFGLSTFYVSGERFSEIVGSPYYMAPEVLRRNYGPEIDVWSAGVILYILLCGVPPFWAESEEGIAQAIIRGKVDFTRDPWPKVSDEAKHLVKRMLDPNPFTRITVQEVLDNSWIQNREHGRTISLGDQVRMRIKQFSLMNRFKRKVLRVVADNLSDEQVDVFKQMFDMMDKDKNGNLSFEELRDGLSMIGHAIPDPDVQMLMDAADIDGNGTLNYDEFITMSVHLRKIESDEHLSEAFRYFDKNQSGYVEFEELKDALSDDDLEASDDQVVKDILNDVDLDKDGRISFEEFKAMMKTGGDWKLASRQYSRALLNALSFKMFKDTSSNSVKCN 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00479 533 Gene3D - 324 499 - -
Gma12g00479 533 ProSitePatterns EF-hand calcium-binding domain. 371 383 IPR018247 -
Gma12g00479 533 PANTHER SERINE/THREONINE-PROTEIN KINASE 35 512 - -
Gma12g00479 533 SUPERFAMILY Protein kinase-like (PK-like) 39 323 IPR011009 -
Gma12g00479 533 ProSiteProfiles EF-hand calcium-binding domain profile. 358 393 IPR002048 GO:0005509
Gma12g00479 533 Pfam EF-hand domain pair 433 497 IPR002048 GO:0005509
Gma12g00479 533 Pfam Protein kinase domain 57 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma12g00479 533 ProSiteProfiles EF-hand calcium-binding domain profile. 467 502 IPR002048 GO:0005509
Gma12g00479 533 ProSiteProfiles EF-hand calcium-binding domain profile. 394 429 IPR002048 GO:0005509
Gma12g00479 533 ProSitePatterns EF-hand calcium-binding domain. 480 492 IPR018247 -
Gma12g00479 533 SUPERFAMILY EF-hand 340 498 IPR011992 -
Gma12g00479 533 SMART serkin_6 57 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma12g00479 533 ProSitePatterns EF-hand calcium-binding domain. 443 455 IPR018247 -
Gma12g00479 533 ProSiteProfiles Protein kinase domain profile. 57 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma12g00479 533 SMART efh_1 362 390 IPR002048 GO:0005509
Gma12g00479 533 SMART efh_1 471 499 IPR002048 GO:0005509
Gma12g00479 533 SMART efh_1 398 426 IPR002048 GO:0005509
Gma12g00479 533 SMART efh_1 434 462 IPR002048 GO:0005509
Gma12g00479 533 Pfam EF-hand domain pair 375 425 IPR002048 GO:0005509
Gma12g00479 533 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 24 35 512 - -
Gma12g00479 533 ProSitePatterns EF-hand calcium-binding domain. 407 419 IPR018247 -
Gma12g00479 533 ProSitePatterns Serine/Threonine protein kinases active-site signature. 177 189 IPR008271 GO:0004672|GO:0006468
Gma12g00479 533 CDD EFh 363 422 IPR002048 GO:0005509
Gma12g00479 533 Gene3D Phosphorylase Kinase; domain 1 59 142 - -
Gma12g00479 533 ProSiteProfiles EF-hand calcium-binding domain profile. 430 465 IPR002048 GO:0005509
Gma12g00479 533 CDD STKc_CAMK 56 314 - -
Gma12g00479 533 ProSitePatterns Protein kinases ATP-binding region signature. 63 90 IPR017441 GO:0005524
Gma12g00479 533 Gene3D Transferase(Phosphotransferase) domain 1 143 323 - -
Gma12g00479 533 MobiDBLite consensus disorder prediction 1 44 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00479 Gma-Chr12 3899964 3904039 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00479 1 524 EF-hand Containing Proteins AT2G31500 67.290 0.0 743
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Gma12g00479 Pkinase 5.4e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00479 K13412 - gmx:100801716 1055.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00479 12 3899964 3904039 Gma12g00479 12 3899964 3904039 ECH
Gma12g00479 12 3899964 3904039 Gma11g01177 11 9918901 9921931 GST