Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00473 ATGTATCCAAAACGGTCAGGCCAAGATGGCCCTGATTCCAGACAGGTGCGCTCAAGTGATAGGATCAAGACAAGGCCAAACGTTTATGGCCGGCCATATTTGTATTACAACCAAAACCTTAGGCGCACCAGGAAAAGCAAGATCAAGACAAGGACGGCAGCTTCACAGATTGCTAAGATGTTGCGTCCGGGGAATCGAAAATCAAAAGATTCTAATACTAATTCTGGCTCTGCCAACCTTCGACGTTCAACAAGGAAAAGAAGGCTTAATGTAAATCTTGAAGATTTTACGGACAGCTCTGGAGCTGAAGACGAAGACTTAATGAGACCACCTACATATCCATCATTGAGAAACCGGATGAAAAATAGTGACAGACGGGATGGTTTGATGTCTAATAAGCGCAAAAGAGTGGCGGAGACTAAACAAACACCTCGACGTGAAGGGCTGCGTCCTCGCCGTTCAAAGGGTGCTGCAATAGAACGATTAATTTTAGAATCAGATGATGAGCAAGACCTTTCAGAAGAAAAGGTTGATCAGGATGAAACAGAAAATGGAAATGATGTTGAGGAAAATGATGCAGATGATGGCCAAAAGGAGATTGAGGGGGATGCTGAGGGGGAAGATGAAGGTGAGGACGAAGGTGATGAAGATGGGGATGATGAAGAGGGTGAAGAAGAGCAGGATGGAAGAAGGCGCTATGATCTTCGAAATCGTTCAGATGTCCGCAGGTTCTCTATGGAGGAAGGGAAGGCCCAGCCAAGATCTCCTCGAAGAGTGTTACATCAAGGTATGGGAACTAAGGTCAGCAGGGATGTAAGGAAAGGTGGATCACGAGTTCATAAGCGTCATCGTTTAGCGAGGCCTGAAGATTCTGATGACTCCCTTCTTGTGGATGAGCTGGACCAAGGCCCAGCTATTCCATGGGGGCGAGGTGGCAACAGATCTGGTCCTCCTTGGCTATTTGGGGGCTTAGACATGCATGGAACAACAGCTTTCGGATTAAATCTTGCTGCATCAGGTTGGGGTCATCAGGGTGATGCGGTGGCTACTCTAACTTCGGGGATTCAAACTGCTGGACCAAGCTCTAAGGGAGGGGCAGATATCCAACCCTTACAGGTTGATGATAGTGTTAGTTTTGATGATATAGGTGGGCTCTCCGAATACATTGATGCTCTTAAGGAAATGGTTTTCTTTCCATTATTGTATCCAGATTTTTTTGCAAGTTACCACATAACTCCACCTAGGGGGGTATTGTTATGTGGGCCCCCTGGCACAGGGAAAACATTAATTGCAAGAGCTTTGGCTTGTGCTGCTTCTAAAGCTGGCCAGAAGGTTAGCTTTTATATGCGTAAAGGAGCAGATGTGTTAAGCAAGTGGGTTGGTGAGGCTGAAAGACAATTGAAACTACTCTTTGAGGAAGCACAAAGGAATCAACCTTCTATTATCTTCTTTGATGAAATAGATGGACTTGCACCTGTGAGGTCTAGTAAGCAAGAACAAATTCACAATTCCATTGTGTCCACTTTGCTTGCTTTGATGGATGGTCTTGACTCTCGTGGGCAAGTTGTTTTAATTGGAGCTACCAACAGGATTGATGCTATTGATGGAGCCTTACGACGCCCTGGTAGATTTGACCGTGAGTTTAACTTTCCCTTGCCTGGTTGTGAGGCACGTGCCGAGATATTAGACATTCACACTCGTAAGTGGAAGCATCCTCCTCCAAATGAGCTGAAAAAGGAACTTGCAGCTAGTTGTGTAGGTTACTGTGGTGCTGACCTGAAGGCTCTTTGTACTGAAGCTGCCATCCGTGCATTCCGTCAAAAATATCCACAGGTTTATACTAGTGATGACAAATTTGTCATTGATGTTGATTCTGTCAAGGTAGAAAAGACTCATTTTATTGAAGCCATGTCTACTATTACTCCTGCTGCTCATAGGGGAGCTATCGTGCACTCTAGGCCATTGTCTCTAGTAGTTCAACCATGTCTTCAGAGACATTTAGAGAAAGCCATGAGTATTATATCTGATATTTTCCCTCCAGCTTCAATTACATCAGAGTTGACCAAACTTTCGATGCTCTCCTACGGGTCTGCAATTCCACTTGTGTATCGGCCTAGGCTTATGCTTTGTGGTGGTGAAGGTACAGGGCTGGATCATCTTGGCCCTGCGGTTTTACATGAGCTGGAAAAATTTCCAGTACATTCATTGGGACTTCCATCTCTTCTGTCAGATCCTAGTGCAAAGACACCAGAGGAGGCATTGGTACATATATTTGGTGAAGCTAGAAGAACAACACCATCAATTCTCTACTTACCACAATTTGATGTTTGGTGGGAGACTGCTCATGAACAGCTCAGGGCTGTTCTCCTGACTTTGCTAGAAGAATTACCATCTGACTTGCCTATCTTACTGCTTGGTACATCCTCAGTTACACTTGCTGAAGTTGAGGAAGTGCCCACTTCCATTTTCCCTCATCGCTCAATTTATAAAGTGAATATGCCATGTGCCAAAGATAGGACTTTGTTTTTCAATCTTTTGATAGAAGCTGCTATGTCAATATTGTTGGAGGGAATCAACAAGAAATCTCAGGATGCAGGATGCCTCCCTGAACTTCCCAAGGCTCCAAAATTGGCTAGTGGTCCAAAAGTGTCTGAGCTAAAAGCAAAGGTGGAAGCTGAGCAACATGCACTTCGTAGATTGCGAATGTGCCTTAGAGATGTTTGCAACCGGATTCTGTATGACAAACGATTTAATGCCTTCCATTATCCAGTGACAGACGAAGATGCACCAAATTATCGTTCAATTATACAGAACCCAATGGACATGGCTACCATTCTGCAGCATGTTGATAATGGTCACTATATTACAAGTGCTGCATTCCTGCAGGACATCAATCTCATTCATGTCCTATGTTTGATCCTTCTTTCTGCAACTCAGGCTTACAATGGAGAGGATTACAATGGTGCTAGGATTGTTAGTAGAGCTTGTGAGCTCCGTGATGCGGTGCATGGAATGCTCTCACAGATGGATCCAGCACTGGTTGCATATTGCGACAAGATTGCTAGCCAAGGTGGCCCAGTTCAGTTGTCTGATGAATTAGGGGATTCTACTTTCCCTGCTACTCCTGTTGTGCAGCTGGGTCAGAGTACTAGAATGAGTGCTCGACTTCGTCATGTCCAACCAGAGGTTAATATGGATCAGAGTTATGAAGTATTGAAGCGAACTAAGAAGATTGCCGAAGTGCATGCAGCAGAAGAAAAGTCACAACAAGATTCGGTGCCATCAAAGTCTTCCCTGGAGCAGCAGGCAAATGACACAAATTCTGAAAGGCTGGAACATGTGTCAATTGAAGGAGATTTGCATGGAACTTTTACAAATAACCTTGCTGATGGCAACAGTCCTGATGATGTCACAGTGCTAGACGGTGAATTTTTAGGAGAAGTAGAGTCTGTCAAGCAGCTTTTTGTGAAGCGTAGTGAAAATTACAGCATTCCACAACTTGAAAGGCTTTACACGAGAATTATGAAGGGCGTGTTTGAAACCAAAAATAAAGGAGTGAGTGGGGATCTTAAGTCTTCGGTTTTGAAGTTTCTGTTGAATTTTGTAGAGGATGATGCAAATTTCTAA 3627 0.4422 MYPKRSGQDGPDSRQVRSSDRIKTRPNVYGRPYLYYNQNLRRTRKSKIKTRTAASQIAKMLRPGNRKSKDSNTNSGSANLRRSTRKRRLNVNLEDFTDSSGAEDEDLMRPPTYPSLRNRMKNSDRRDGLMSNKRKRVAETKQTPRREGLRPRRSKGAAIERLILESDDEQDLSEEKVDQDETENGNDVEENDADDGQKEIEGDAEGEDEGEDEGDEDGDDEEGEEEQDGRRRYDLRNRSDVRRFSMEEGKAQPRSPRRVLHQGMGTKVSRDVRKGGSRVHKRHRLARPEDSDDSLLVDELDQGPAIPWGRGGNRSGPPWLFGGLDMHGTTAFGLNLAASGWGHQGDAVATLTSGIQTAGPSSKGGADIQPLQVDDSVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRIDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKHPPPNELKKELAASCVGYCGADLKALCTEAAIRAFRQKYPQVYTSDDKFVIDVDSVKVEKTHFIEAMSTITPAAHRGAIVHSRPLSLVVQPCLQRHLEKAMSIISDIFPPASITSELTKLSMLSYGSAIPLVYRPRLMLCGGEGTGLDHLGPAVLHELEKFPVHSLGLPSLLSDPSAKTPEEALVHIFGEARRTTPSILYLPQFDVWWETAHEQLRAVLLTLLEELPSDLPILLLGTSSVTLAEVEEVPTSIFPHRSIYKVNMPCAKDRTLFFNLLIEAAMSILLEGINKKSQDAGCLPELPKAPKLASGPKVSELKAKVEAEQHALRRLRMCLRDVCNRILYDKRFNAFHYPVTDEDAPNYRSIIQNPMDMATILQHVDNGHYITSAAFLQDINLIHVLCLILLSATQAYNGEDYNGARIVSRACELRDAVHGMLSQMDPALVAYCDKIASQGGPVQLSDELGDSTFPATPVVQLGQSTRMSARLRHVQPEVNMDQSYEVLKRTKKIAEVHAAEEKSQQDSVPSKSSLEQQANDTNSERLEHVSIEGDLHGTFTNNLADGNSPDDVTVLDGEFLGEVESVKQLFVKRSENYSIPQLERLYTRIMKGVFETKNKGVSGDLKSSVLKFLLNFVEDDANF 1208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00473 1208 Gene3D - 553 638 - -
Gma12g00473 1208 MobiDBLite consensus disorder prediction 167 224 - -
Gma12g00473 1208 MobiDBLite consensus disorder prediction 1 30 - -
Gma12g00473 1208 ProSitePatterns AAA-protein family signature. 522 540 IPR003960 GO:0005524|GO:0016887
Gma12g00473 1208 MobiDBLite consensus disorder prediction 1083 1110 - -
Gma12g00473 1208 SMART bromo_6 897 1011 IPR001487 GO:0005515
Gma12g00473 1208 CDD AAA 413 552 - -
Gma12g00473 1208 Pfam ATPase family associated with various cellular activities (AAA) 417 552 IPR003959 GO:0005524|GO:0016887
Gma12g00473 1208 Gene3D - 889 1024 IPR036427 GO:0005515
Gma12g00473 1208 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 376 642 IPR027417 -
Gma12g00473 1208 Pfam AAA+ lid domain 579 616 IPR041569 -
Gma12g00473 1208 MobiDBLite consensus disorder prediction 225 255 - -
Gma12g00473 1208 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 701 930 IPR027417 -
Gma12g00473 1208 Pfam Bromodomain 910 967 IPR001487 GO:0005515
Gma12g00473 1208 SMART AAA_5 413 554 IPR003593 -
Gma12g00473 1208 PANTHER BNAC08G44480D PROTEIN 1 1203 - -
Gma12g00473 1208 MobiDBLite consensus disorder prediction 60 292 - -
Gma12g00473 1208 Gene3D - 375 645 IPR027417 -
Gma12g00473 1208 PANTHER AAA DOMAIN-CONTAINING 1 1203 IPR045199 -
Gma12g00473 1208 MobiDBLite consensus disorder prediction 119 166 - -
Gma12g00473 1208 CDD Bromo_AAA 897 1014 - -
Gma12g00473 1208 ProSiteProfiles Bromodomain profile. 920 967 IPR001487 GO:0005515
Gma12g00473 1208 SUPERFAMILY Bromodomain 895 1019 IPR036427 GO:0005515
Gma12g00473 1208 MobiDBLite consensus disorder prediction 1090 1105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00473 Gma-Chr12 3866771 3873446 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00473 363 617 Calmodulin-binding Proteins AT3G56690 36.680 8.66e-42 165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00473 K22531 - gmx:100787765 2285.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00473 12 3866771 3873446 Gma12g00473 12 3866771 3873446 ECH
Gma12g00473 12 3866771 3873446 Gma11g01172 11 9875740 9882983 GST