Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00466 ATGGGGTTCTCATTAAAACACCGATTAATCTACGGTTTCAATGTGAACCAATGTTCAACTAGGCTTCTATTTGAGCTGGTGATTTTGTCACACTTGTGGTTGCAAGTTACAAGCCTTGGTTCCATGTCATCCATTGCCATCTCTTACGGCGAAAAGGGTTCTGTGTTTTGTGGTTTGAAATCTGATGGCTCTCACACAGTGACATGTTATGGATCCAACTCAGCCATAATCTATGGAACACCAACACATTTTTCATTTCTTGGCCTAACAGCTGGAGATGGCTTTGTATGTGGTCTTCTAATGGGTTCTAATCAACCATACTGTTGGGGCAGCAGTGCCTACATTGAAATGGGAGTGCCTCAACCTATGATCAAAGGAGCACAGTACCTAGAAATCAGTGCCGGTGACTACCATGTTTGTGGCTTGAGGAAACCTATGACTGGAAGACACAGGAACATTTCCTTGGTTGATTGCTGGGGATACAACATGACCAAGAACTATGTGTTTGGTGCACAGATTCAATCAATCTCAGCAGGTTCTGAATTCAATTGTGGCCTTTTTTCTCAGAACAGGACTGTGTTTTGCTGGGGTGACGAAACTAATAGCTTAGTGATTAGCTTGATTCCTCATGACATGAGATTTCATAAAATTTCAGCTGGGGGGTACCATGTGTGTGGAATCTCAGAAGGGGTGAGCTCCAAAACTTTTTGTTGGGGGAGAAGCTTGAACCTTGAGGAAGAAATTTCAGTGTCACATGCTGGTCAAGGAAATGTTGATTTGGCACCAAATGACCCCATGCTTTCGGTAGTGGGAGGGAAGTTCCATGCATGTGGCATTAAGAGCTATGACCGTGGAGTGATTTGTTGGGGATTTATCATCAAACCAAGCACTCCATCTCCTAAAGGGATTAAGGTTTTTGAAGTTGCTGCTGGTGATTACTTTACTTGTGCAGTTCTTGCTGTGAAATCTCTTATGCCTTCATGTTGGGGTGTTGATTTTCCCACCTCTCTTCCTTTAGCTGTTTCACCAGGAATGTGCCAACCTGCTCCATGTGCTCCTGGCTCCTATGCCATTGATCAGCATAAGAGTCTTTGCAAGTCACCGGATTCTCGTGTTTGCATGAGGTGCAGTGGTGCTTGTCCTCCTGAAATGCATCTGAAGAGTGCATGCAATTTAGCATCTGATAGAGTGTGTGAATATAACTGTTCTTGTTGTTCTTCATCCGAATGCTTCTTGAACTGCTCCTCTTCATACTCCAATGCTGCTGCCGCCGAGAAGAAAAGTGAAAAATTTTGGGCTCTGCAGCTGCCAGTTCTCATTGCTGAGATTGCTTTTGCAGTTTTCGTAGTTAGTATTGTGTCAATAACTGCAGTGTTATACATCCGCTACAGGCTAAGAGATTGTGAGTGCTCAAAAGGGTCAATGGTGAAGAAACTTAATGGAAATTCTTCCCTCCAAAACGAGAACAAGGTGAGGCCAGACTTGGAGGAACTTAAGATCAGAAGGGCTCAAACGttcacctatgaggagcttgaaactgcaaccagtggattcaaagaagagtccatagtagggaagggaagtttttcctGCCCTGCAGATAGTGGTTCCCCTTTAGCTGAACTCccagctgggactcttggttatcttgatcccgagtactataggcttcactacctcacaacaaaatctgatgtttatagctttggtgttctccttttggagattctaagtggtagaaaAGCCATTGACATGCAATATGAAGAAGGCAACATAGTGGAATGGGCAGTGCCTCTTATCAAATCAGGAGACATAACCGCGATTTTGGACCCGGTTTTGAAGCCTCCTCCTGATCTTGAAGCATTGAAGAGAATAGCCAATGTGGCTTGTAAGTGTGTGAGAATGAGAGGGAAAGAAAGGCCCTCAATGGATAAAGTAACAACAGCTTTGGAGAGAGGTCTTGCACAGTTAATGGGAAGTCCATGCATTGAGCAGCCAATTTTGCCCACTGAGGTGGTTTTGGGAAGCAACAGATTGCACAAGAAGTCATCTCAAAGATCTTCAAACAGGTCAGTTTCTGAGACAGATGTGGCAGAAACTGAGGACCAAAGGTTTGAGTTTAGAGCACCCTCATGGATAACTTTCCCCAGTGTGACATCTTCTCAAAGGAGAAAGTCATCAGTGTCTGAGGCAGATGTTGATGGGAAGAACAATGCAGAAGGGAAGAACATGGGCAATGTTGGAGGGGGTGGTGATGTTTTGAGAAGCCTTGAGGAAGAGATTGGTCCTGCTTCTCCAAGAGAGAGGCTGTTCTTGCAGCACAACTTCTAA 2331 0.4084 MGFSLKHRLIYGFNVNQCSTRLLFELVILSHLWLQVTSLGSMSSIAISYGEKGSVFCGLKSDGSHTVTCYGSNSAIIYGTPTHFSFLGLTAGDGFVCGLLMGSNQPYCWGSSAYIEMGVPQPMIKGAQYLEISAGDYHVCGLRKPMTGRHRNISLVDCWGYNMTKNYVFGAQIQSISAGSEFNCGLFSQNRTVFCWGDETNSLVISLIPHDMRFHKISAGGYHVCGISEGVSSKTFCWGRSLNLEEEISVSHAGQGNVDLAPNDPMLSVVGGKFHACGIKSYDRGVICWGFIIKPSTPSPKGIKVFEVAAGDYFTCAVLAVKSLMPSCWGVDFPTSLPLAVSPGMCQPAPCAPGSYAIDQHKSLCKSPDSRVCMRCSGACPPEMHLKSACNLASDRVCEYNCSCCSSSECFLNCSSSYSNAAAAEKKSEKFWALQLPVLIAEIAFAVFVVSIVSITAVLYIRYRLRDCECSKGSMVKKLNGNSSLQNENKVRPDLEELKIRRAQTFTYEELETATSGFKEESIVGKGSFSCPADSGSPLAELPAGTLGYLDPEYYRLHYLTTKSDVYSFGVLLLEILSGRKAIDMQYEEGNIVEWAVPLIKSGDITAILDPVLKPPPDLEALKRIANVACKCVRMRGKERPSMDKVTTALERGLAQLMGSPCIEQPILPTEVVLGSNRLHKKSSQRSSNRSVSETDVAETEDQRFEFRAPSWITFPSVTSSQRRKSSVSEADVDGKNNAEGKNMGNVGGGGDVLRSLEEEIGPASPRERLFLQHNF 776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00466 776 Pfam Protein tyrosine and serine/threonine kinase 549 649 IPR001245 GO:0004672|GO:0006468
Gma12g00466 776 SUPERFAMILY RCC1/BLIP-II 36 291 IPR009091 -
Gma12g00466 776 MobiDBLite consensus disorder prediction 678 701 - -
Gma12g00466 776 ProSiteProfiles TNFR/NGFR family cysteine-rich region domain profile. 350 398 IPR001368 GO:0005515
Gma12g00466 776 MobiDBLite consensus disorder prediction 718 767 - -
Gma12g00466 776 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN ACR4 21 531 - -
Gma12g00466 776 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN ACR4 532 776 - -
Gma12g00466 776 Gene3D Transferase(Phosphotransferase) domain 1 526 658 - -
Gma12g00466 776 PANTHER RECEPTOR-LIKE KINASE 21 531 - -
Gma12g00466 776 PANTHER RECEPTOR-LIKE KINASE 532 776 - -
Gma12g00466 776 SUPERFAMILY Protein kinase-like (PK-like) 543 662 IPR011009 -
Gma12g00466 776 MobiDBLite consensus disorder prediction 678 694 - -
Gma12g00466 776 Gene3D - 85 342 IPR009091 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00466 Gma-Chr12 3814789 3817542 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00466 532 776 Receptor kinase-like Gene Family AT3G59420 75.102 3.15e-110 355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Gma12g00466 PK_Tyr_Ser-Thr 4.3e-07 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00466 - - gmx:100797455 1075.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00466 12 3814789 3817542 Gma12g00466 12 3814789 3817542 ECH
Gma12g00466 12 3814789 3817542 Gma11g01167 11 9827114 9829864 GST
Gma12g00466 12 3814789 3817542 Gma13g03076 13 45087844 45090459 PCT
Gma12g00466 12 3814789 3817542 Gma15g00286 15 2470053 2472761 PCT