Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00460 ATGAAAATTCAGTGCGATGTGTGTGAGAAAGCCCCGGCAACCGTGATTTGCTGCGCAGATGAGGCAGCTTTGTGTGCCAAATGTGACGTTGAAGTTCATGCTGCAAACAAGCTTGCAAGCAAGCACCAGAGGCTTCTCCTTCAATCTTTATCTAACAAGCTTCCCAGATGTGACATATGTCAAGATAAGCCAGCTTTCATATTTTGTGTTGAGGACAGAGCACTCTTCTGTAAAGACTGTGATGAACCTATTCATTTAGCCAGTAGCCTTTCTGCAAACCACCAGCGCTTCCTTGCTACTGGTATCCGGGTGGCTTTGGGTTCTAATTGCACCAAAGGCAATGAAAAAGGTCACGTGGAACCATCTAAACCAAAAGCACAAGAAGTTCCTGCGAAAATTCCTTCTCAGCAAGTGCCTAGCTTCACATCCTCTTGGGCAGTTGATGACTTGTTGGAATTAACAGACTTTGAATCACCAGACAAAGTTCAGAAGCAATCCCTTGAGTTTGGAGAACTTGAATGGCTAGCAGATGTAGGCCTTTTTGGTGAACAGTTTCCTCATGAAGCTTTAGCGGCGGCTGAAGTTCCTCAGCTTCCAATGACTAGCAGTGTTGGCTCACACAAAGCCCCCAAATCCTTGTTGTCTTACAAAAAGCCTAGGATTGAAGTCCTAGATGAAGATGATGATGAGCACTTCACCGTACCAGATCTCGGATAA 717 0.4519 MKIQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQSLSNKLPRCDICQDKPAFIFCVEDRALFCKDCDEPIHLASSLSANHQRFLATGIRVALGSNCTKGNEKGHVEPSKPKAQEVPAKIPSQQVPSFTSSWAVDDLLELTDFESPDKVQKQSLEFGELEWLADVGLFGEQFPHEALAAAEVPQLPMTSSVGSHKAPKSLLSYKKPRIEVLDEDDDEHFTVPDLG 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00460 238 CDD Bbox1_BBX-like 57 98 - -
Gma12g00460 238 Pfam B-box zinc finger 52 94 IPR000315 GO:0008270
Gma12g00460 238 Pfam B-box zinc finger 4 44 IPR000315 GO:0008270
Gma12g00460 238 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Gma12g00460 238 MobiDBLite consensus disorder prediction 113 133 - -
Gma12g00460 238 SMART bboxneu5 52 99 IPR000315 GO:0008270
Gma12g00460 238 SMART bboxneu5 4 47 IPR000315 GO:0008270
Gma12g00460 238 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Gma12g00460 238 Gene3D Classic Zinc Finger 1 98 - -
Gma12g00460 238 PANTHER B-BOX ZINC FINGER PROTEIN 24 1 238 - -
Gma12g00460 238 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 238 - -
Gma12g00460 238 CDD Bbox1_BBX-like 5 47 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00460 Gma-Chr12 3772222 3776198 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00460 1 162 Orphan Transcription Factor Family AT1G06040 69.231 7.33e-73 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Gma12g00460 zf-B_box 2.5e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00460 - - gmx:732574 489.189
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00460 12 3772222 3776198 Gma12g00460 12 3772222 3776198 ECH
Gma12g00460 12 3772222 3776198 Gma11g01162 11 9782881 9785380 GST
Gma13g03080 13 45109700 45112534 Gma12g00460 12 3772222 3776198 PCT
Gma15g00281 15 2444162 2448090 Gma12g00460 12 3772222 3776198 PCT
Gma12g00460 12 3772222 3776198 Gma13g03080 13 45109700 45112534 PCT
Gma12g00460 12 3772222 3776198 Gma15g00281 15 2444162 2448090 PCT