Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00456 ATGCCGTTTCCGGCGAAACCAACGCGGGATTTCGACGAGTTGGCGAGTCCGTCGAACAACCTGTGGGTGGGGAATCTGGCGGCGGACGTCACCGACGCTGATCTGATGGAGCTCTTCGCCAAATACGGCGCACTCGACAGCGTGACTTCCTATTCCGCTCGCAGTTACGCTTTCGTGTTCTTCAAACGCGTCGAAGACGCCAAAGCCGCCAAGAACGCTCTCCAAGGAACCTCTCTCCGCGGCAGTTCCTTGAAGATTGAGTTTGCCAGACCGGCAAAGGCATGTAAACAACTTTGGGTGGGTGGTATTAGTCAGGCTGTTACAAAGGAAGATTTGGAAGCTGAATTTCAGAAATTTGGTAAAATTGAGGATTTTAAATTCTTCAGAGACAGAAATACTGCATGTGTTGAATTTTTCAATTTGGAAGATGCTACTCAGGCCATGAAAATCATGAATGGGAAACGAATTGGCGGGGAGCATATTCGTGTTGACTTCCTTCGATCACAATCTACAAAAAGGGATCAGCTTGATTATGGGCAGTTTCAGGGAAAAAACTTGGGGCATACTGATGCTTATTCTGGACAGAAAAGACCATTGCATTCACAGCCTCCAATGGGGGGAAAAGGTGACAGTCAACCAAGTAATATTTTGTGGATCGGTTATCCGCCTGCTGTTCAGATTGATGAACAAATGCTCCACAATGCCATGATTTTGTTTGGTGAAATCGAGAGAATCAAGAGTTTTCCTTTGAGAAATTATTCTATTGTTGAGTTTAGAAGTGTTGATGAAGCTCGACGTGCAAAAGAGGGCCTTCAAGGACGCCTTTTTAATGATCCTCGAATAACAATTATGTATTCTAGCAGTGACCTAGTACCTGGCAGTGATTACCCCAGCTTTTTTCCTGGAAGTAATGGACCAAGACCTGATGTATTGCTGAATGAGCATCCATTTCGACCATTACAAATGGATGTATTTGGTCATAATCGTCCAATGGTTCTAAATAATTTTCCTGGACAGTTACCACCTAGTGGTATTATGGGACTAAATGTACCAATGCGACCTTTTGGTAATCACGGTGGTGTTGAATCTGTTATTTCTGGCCCTGAGTTTAACGAGATTGATGCGCTCCATAAATTTCAGGATGGTAGCTCCAAGAGTAACATGGGTCCAAACTGGAAAAGGCCATCTCCTCCTGCACAGAGCACTAGGCTTCCTACCAGATCAACGTCTGGGGCATGGGATGTACTTGACAAAAACCATATTCCAAGAGATTCTAAACGTTCAAGGATAGATGGACCCTTGCCTGTTGCTGAAGCCCTATTTCCTTTTAGGAATATTGATGATCGGGGGTTAGCTCTAGAACAAGCATATGGGATTGATCCAGCTATTGATGGAAATGGTTCTGGTCCATATGTAAACATTCAAGGAAAGAGTCACCTTGGTCCAGTTAGCTCAAGGATTACAGCTGGAGTACATGATATTGTCCAACCTGATATTGATCATATTTGGCGCGGAGTTATTGCAAAAGGGGGAACTCCTGTTTGCCGTGCTAGATGTGTACCAATTGGGAAAGGAATTGGGACTGAGCTTCCTGGTGTTGTTGATTGCTCGGCTAGGACGGGATTGGATATACTCACAAAACATTATGCTGATGCAATTGGTTTTGATATTGTTTTTTTTCTGCCTGATAGTGAAGACGATTTTGCTTCATATACTGAGTTCCTACGCTATCTTAGTGCGAAAAATCGTGCTGGTGTTGCCAAATTTGTTGATAACACCACCTTATTCTTGGTGCCTCCTTCTGATTTTCTCACAAGAGTTTTGAAAGTCACTGGACCTGAGCGTCTATATGGTGTGGTTCTTAAGTTTCCACCAGTGCCAAGTAGTGCACCTATGCAACAGCCATCGCATTTGCCTGTACCGACAACTCAGTATATGCAACATATTCCTCCTTCACAGACTGAATATGGTTTGATTCCTGTTAAAGAGGAACAGGTTTTGCCAATGGATTATAACAGACCGTTGCATGAGGATTCTAAGCTTCCTGCTAAACCAGTCTATCCACCAGCAGGTGGGCCCCCTCCAGTTCATTCTGGGCCTCCCGATTATTCTACTAATAATACTGTTGCTGGGTCCCAAGCTGGAGTTGCATTAACACCTGAGCTTATTGCAACTTTAGCTTCTTTACTTCCTACAACTACACAATTACCTACCACTGATGGTGCCAAGTCAGCAGTAGGTTCTTCGACCATGAAGCTTCCATTTCCTCCCATGACACCAAATGATGGAAATCAATCTCATCAAATTGCAGATCAATCCACTCATCCTCCTCAACAGTTGAGGAACATGTATAACGTTCACAATGCTCCCTATCAGCCCTATCCACCATTATCTGCTCCTGCTGGCAATCCTGCTCAAGTGTCTGGCAGTTCTCATATCCAAGATACTGCTGCCAACATGCAGCAGCAGCAAGGTGCTGTTTCATCAAGACACATGCCTAATTTCATGATGCCTACTCAAAGTGGACAGGTAGCTGTATCCCCCCATGCCATCAAGGACAAACAGAGGTGGAGGCTGATAAGAACCAGAGATACCAGTCAACGTTACAATTTGCTGCCAACCTTCTTCTCCAACTACAACAGCAACAGCAACAAGCCCCAGGAGGACATGGGCCAGGACAATGAGAACTGTTTTCTGTAA 2700 0.4459 MPFPAKPTRDFDELASPSNNLWVGNLAADVTDADLMELFAKYGALDSVTSYSARSYAFVFFKRVEDAKAAKNALQGTSLRGSSLKIEFARPAKACKQLWVGGISQAVTKEDLEAEFQKFGKIEDFKFFRDRNTACVEFFNLEDATQAMKIMNGKRIGGEHIRVDFLRSQSTKRDQLDYGQFQGKNLGHTDAYSGQKRPLHSQPPMGGKGDSQPSNILWIGYPPAVQIDEQMLHNAMILFGEIERIKSFPLRNYSIVEFRSVDEARRAKEGLQGRLFNDPRITIMYSSSDLVPGSDYPSFFPGSNGPRPDVLLNEHPFRPLQMDVFGHNRPMVLNNFPGQLPPSGIMGLNVPMRPFGNHGGVESVISGPEFNEIDALHKFQDGSSKSNMGPNWKRPSPPAQSTRLPTRSTSGAWDVLDKNHIPRDSKRSRIDGPLPVAEALFPFRNIDDRGLALEQAYGIDPAIDGNGSGPYVNIQGKSHLGPVSSRITAGVHDIVQPDIDHIWRGVIAKGGTPVCRARCVPIGKGIGTELPGVVDCSARTGLDILTKHYADAIGFDIVFFLPDSEDDFASYTEFLRYLSAKNRAGVAKFVDNTTLFLVPPSDFLTRVLKVTGPERLYGVVLKFPPVPSSAPMQQPSHLPVPTTQYMQHIPPSQTEYGLIPVKEEQVLPMDYNRPLHEDSKLPAKPVYPPAGGPPPVHSGPPDYSTNNTVAGSQAGVALTPELIATLASLLPTTTQLPTTDGAKSAVGSSTMKLPFPPMTPNDGNQSHQIADQSTHPPQQLRNMYNVHNAPYQPYPPLSAPAGNPAQVSGSSHIQDTAANMQQQQGAVSSRHMPNFMMPTQSGQVAVSPHAIKDKQRWRLIRTRDTSQRYNLLPTFFSNYNSNSNKPQEDMGQDNENCFL 899
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00456 899 MobiDBLite consensus disorder prediction 879 899 - -
Gma12g00456 899 CDD RRM3_Spen 98 167 - -
Gma12g00456 899 PANTHER RNA RECOGNITION MOTIF-CONTAINING 4 873 - -
Gma12g00456 899 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 19 91 IPR000504 GO:0003723
Gma12g00456 899 MobiDBLite consensus disorder prediction 180 211 - -
Gma12g00456 899 MobiDBLite consensus disorder prediction 382 410 - -
Gma12g00456 899 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 96 168 IPR000504 GO:0003723
Gma12g00456 899 PANTHER FLOWERING TIME CONTROL PROTEIN FPA 4 873 - -
Gma12g00456 899 MobiDBLite consensus disorder prediction 673 709 - -
Gma12g00456 899 MobiDBLite consensus disorder prediction 734 774 - -
Gma12g00456 899 SUPERFAMILY RNA-binding domain, RBD 193 292 IPR035979 GO:0003676
Gma12g00456 899 CDD RRM3_Spen 21 90 - -
Gma12g00456 899 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 21 84 IPR000504 GO:0003723
Gma12g00456 899 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 98 161 IPR000504 GO:0003723
Gma12g00456 899 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 227 281 IPR000504 GO:0003723
Gma12g00456 899 MobiDBLite consensus disorder prediction 686 700 - -
Gma12g00456 899 Gene3D - 94 201 IPR012677 -
Gma12g00456 899 CDD RRM3_Spen 217 286 - -
Gma12g00456 899 Pfam SPOC domain 498 614 IPR012921 -
Gma12g00456 899 Gene3D - 5 93 IPR012677 -
Gma12g00456 899 MobiDBLite consensus disorder prediction 759 774 - -
Gma12g00456 899 Gene3D - 206 297 IPR012677 -
Gma12g00456 899 SMART rrm1_1 216 284 IPR000504 GO:0003723
Gma12g00456 899 SMART rrm1_1 20 87 IPR000504 GO:0003723
Gma12g00456 899 SMART rrm1_1 97 164 IPR000504 GO:0003723
Gma12g00456 899 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 215 288 IPR000504 GO:0003723
Gma12g00456 899 SUPERFAMILY RNA-binding domain, RBD 17 172 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00456 Gma-Chr12 3731754 3743232 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00456 20 277 Eukaryotic Initiation Factors Gene Family AT2G36660 26.408 7.13e-13 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00456 - - gmx:100795342 1691.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00456 12 3731754 3743232 Gma12g00456 12 3731754 3743232 ECH
Gma12g00456 12 3731754 3743232 Gma11g01155 11 9730477 9741686 GST
Gma13g03086 13 45140447 45145927 Gma12g00456 12 3731754 3743232 PCT
Gma15g00276 15 2399252 2412943 Gma12g00456 12 3731754 3743232 PCT
Gma12g00456 12 3731754 3743232 Gma13g03086 13 45140447 45145927 PCT
Gma12g00456 12 3731754 3743232 Gma15g00276 15 2399252 2412943 PCT